Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,531,276 G→A 7.6% intergenic (+36/+12) lpxC → / ← PP_1344 UDP‑3‑O‑[3‑hydroxymyristoyl] N‑acetylglucosamine deacetylase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,531,2760GA 7.6% 549.3 / 23.0 184intergenic (+36/+12)lpxC/PP_1344UDP‑3‑O‑[3‑hydroxymyristoyl] N‑acetylglucosamine deacetylase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (105/64);  new base A (9/5);  total (115/69)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 190 total aligned reads displayed.

ACAACCAGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCACGCTTGGC  >  NC_002947/1531128‑1531425
                                                                                                                                                    |                                                                                                                                                     
acaacCAGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCgg                                                                                                                                                      <  1:4751621/150‑1 (MQ=255)
 caacCAGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCggg                                                                                                                                                     >  1:3922043/1‑150 (MQ=255)
      aGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGcc                                                                                                                                                >  2:4300893/1‑150 (MQ=255)
      aGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGcc                                                                                                                                                >  2:2234908/1‑150 (MQ=255)
       gCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCCGAAGGTGGCCt                                                                                                                                               <  1:2662722/150‑1 (MQ=255)
       gCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCCGAAGGTGGCCt                                                                                                                                               <  2:3356708/150‑1 (MQ=255)
         tGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCttt                                                                                                                                             >  1:1109804/1‑150 (MQ=255)
          gTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCtttt                                                                                                                                            <  2:1734803/150‑1 (MQ=255)
          gTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCCGAAGGTGGCCttaa                                                                                                                                            <  2:1114549/150‑3 (MQ=255)
           ttGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCttttt                                                                                                                                           <  1:2077557/150‑1 (MQ=255)
           ttGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCttttt                                                                                                                                           <  2:4513939/150‑1 (MQ=255)
             gcgcAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTa                                                                                                                                         <  2:793593/150‑1 (MQ=255)
              cgcAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTAt                                                                                                                                        <  1:2903584/150‑1 (MQ=255)
                 aaGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCATGTTTATGGc                                                                                                                                     >  2:2292623/1‑150 (MQ=255)
                     tGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGc                                                                                                                                 >  2:3260968/1‑150 (MQ=255)
                       aTTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGccc                                                                                                                               >  1:769108/1‑150 (MQ=255)
                       aTTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGccc                                                                                                                               >  1:411648/1‑150 (MQ=255)
                          gCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTgg                                                                                                                            <  2:1318380/150‑1 (MQ=255)
                          gCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGGACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTgg                                                                                                                            <  1:3349435/150‑1 (MQ=255)
                            tGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCGCCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGc                                                                                                                          >  1:1368207/1‑150 (MQ=255)
                             gAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCg                                                                                                                         >  2:1685402/1‑150 (MQ=255)
                              aaaCCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGt                                                                                                                        >  1:3484642/1‑150 (MQ=255)
                              aaaCCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGt                                                                                                                        >  2:1112763/1‑150 (MQ=255)
                                aCCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTgg                                                                                                                      >  2:4343897/1‑150 (MQ=255)
                                aCCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTgg                                                                                                                      <  2:2732528/150‑1 (MQ=255)
                                aCCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTgg                                                                                                                      <  2:1932018/150‑1 (MQ=255)
                                  cGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGGTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGgc                                                                                                                    >  2:690540/1‑150 (MQ=255)
                                   gATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGgcc                                                                                                                   >  2:4815930/1‑150 (MQ=255)
                                     tGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGgccgc                                                                                                                 <  2:3143195/150‑1 (MQ=255)
                                         tGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAAc                                                                                                             <  1:757688/150‑1 (MQ=255)
                                         tGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAAc                                                                                                             >  2:5402666/1‑150 (MQ=255)
                                                        ttCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCa                                                                                              <  1:712125/150‑1 (MQ=255)
                                                        ttCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCa                                                                                              <  2:4148588/150‑1 (MQ=255)
                                                            aaGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTCCGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCa                                                                                          >  2:1197660/1‑150 (MQ=255)
                                                              gATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATgg                                                                                                                                      >  2:1558319/1‑104 (MQ=255)
                                                              gATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGt                                                                                        >  1:3107665/1‑150 (MQ=255)
                                                                tGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGttt                                                                                      <  1:2241140/150‑1 (MQ=255)
                                                                   cAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTggg                                                                                   <  1:551839/150‑1 (MQ=255)
                                                                    aGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTgggg                                                                                  <  2:641166/150‑1 (MQ=255)
                                                                    aGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTgggg                                                                                  <  1:4223314/150‑1 (MQ=255)
                                                                    aGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTgggg                                                                                  >  2:1846751/1‑150 (MQ=255)
                                                                       aCGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCg                                                                               >  2:2019003/1‑150 (MQ=255)
                                                                       aCGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCg                                                                               <  1:871932/150‑1 (MQ=255)
                                                                        cGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAGCACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCgg                                                                              <  1:4281732/150‑1 (MQ=255)
                                                                         ggCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGt                                                                             >  2:3601798/1‑150 (MQ=255)
                                                                                aTCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTGTGGGGTCGGTAATGccc                                                                      >  2:2952929/1‑150 (MQ=255)
                                                                                   tcGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTcg                                                                   >  1:1916230/1‑150 (MQ=255)
                                                                                        cATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGgt                                                              <  1:4407736/150‑1 (MQ=255)
                                                                                         aTGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGgtg                                                             <  2:307160/150‑1 (MQ=255)
                                                                                             gcCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTcgc                                                         >  1:584686/1‑150 (MQ=255)
                                                                                                  gTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAgg                                                    <  2:1838041/150‑1 (MQ=255)
                                                                                                     gggggggtgtAATTTGGAACAGTCTCTAGTTCATTAAGGCCACATTATGGTGGAGTTTTTTATTGCTTTACGTGGGCGTGGGCAGCCAAACGTTCCAGTGGGGGAGTGAGTTTGGGGTCGGTAATGCCCTGGGAGGTGTCGCGCAGGctc                                                 >  2:4451977/7‑150 (MQ=255)
                                                                                                     gCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGctc                                                 >  1:969880/1‑150 (MQ=255)
                                                                                                        gCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCg                                              <  1:2670183/150‑1 (MQ=255)
                                                                                                              tAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCcgcg                                        >  2:3558023/1‑150 (MQ=255)
                                                                                                              tAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCcgcg                                        >  1:130980/1‑150 (MQ=255)
                                                                                                                aGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCt                                      <  1:3717762/150‑1 (MQ=255)
                                                                                                                aGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCt                                      <  1:2354029/150‑1 (MQ=255)
                                                                                                                  ttCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGt                                    >  2:2674118/1‑150 (MQ=255)
                                                                                                                   tCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGtt                                   <  1:3425053/150‑1 (MQ=255)
                                                                                                                   tCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGtt                                   <  2:2413565/150‑1 (MQ=255)
                                                                                                                      aaCACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGa                                <  2:2103498/150‑1 (MQ=255)
                                                                                                                      aaCACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGa                                >  2:1058330/1‑150 (MQ=255)
                                                                                                                        cacTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGaaa                              >  2:4624733/1‑150 (MQ=255)
                                                                                                                        cacTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGaaa                              <  1:4301247/150‑1 (MQ=255)
                                                                                                                           tctctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCt                           >  1:1778392/1‑150 (MQ=255)
                                                                                                                           tctctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCt                           >  1:4821820/1‑150 (MQ=255)
                                                                                                                            ctctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTc                          >  2:1920571/1‑150 (MQ=255)
                                                                                                                             tctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCg                         >  2:4012403/1‑150 (MQ=255)
                                                                                                                             tctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCg                         >  1:1114399/1‑150 (MQ=255)
                                                                                                                             tctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCg                         >  1:2198031/1‑150 (MQ=255)
                                                                                                                             tctAGTACATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCg                         >  2:3320738/1‑150 (MQ=255)
                                                                                                                                 gTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCg                     >  1:1201631/1‑150 (MQ=255)
                                                                                                                                  ttCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGc                    >  1:1338581/1‑150 (MQ=255)
                                                                                                                                  ttCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGc                    >  2:4752021/1‑150 (MQ=255)
                                                                                                                                   taaaaaaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCa                   >  2:2567514/6‑150 (MQ=255)
                                                                                                                                    cATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTg                                     >  1:3356235/1‑131 (MQ=255)
                                                                                                                                    aaaaaaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGgtgt                                                            <  1:404365/104‑1 (MQ=255)
                                                                                                                                     aTTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATg                 >  1:4967649/1‑150 (MQ=255)
                                                                                                                                      ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCaa                                                                                                              <  1:617114/56‑1 (MQ=255)
                                                                                                                                      ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCaa                                                                                                              >  2:617114/1‑56 (MQ=255)
                                                                                                                                      ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGc                >  1:2532154/1‑150 (MQ=255)
                                                                                                                                      ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGc                >  1:2839137/1‑150 (MQ=255)
                                                                                                                                      ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGc                >  1:2878869/1‑150 (MQ=255)
                                                                                                                                      ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGATTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGc                >  2:2631887/1‑150 (MQ=255)
                                                                                                                                       tAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGcc               <  2:1109804/150‑1 (MQ=255)
                                                                                                                                       aaaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGcc               >  1:3891841/2‑150 (MQ=255)
                                                                                                                                        aaGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGccc              <  2:1955689/150‑1 (MQ=255)
                                                                                                                                        aaGGCCACCTTCGGGTGGCCATTATTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCACGGCCGCGCTGTTCGAAAGCTCGGCCGCATTccc              <  2:3850554/150‑1 (MQ=255)
                                                                                                                                        aaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGccc              >  1:854180/1‑150 (MQ=255)
                                                                                                                                        aaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGccc              >  1:2688862/1‑150 (MQ=255)
                                                                                                                                           gCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGcc           >  1:4235582/1‑150 (MQ=255)
                                                                                                                                           gCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGcc           >  2:3981095/1‑150 (MQ=255)
                                                                                                                                            ccACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCa          >  2:349851/1‑150 (MQ=255)
                                                                                                                                            ccACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCa          >  1:5361685/1‑150 (MQ=255)
                                                                                                                                             cACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCAc         >  2:3687122/1‑150 (MQ=255)
                                                                                                                                               ccTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCACGc       >  1:4702990/1‑150 (MQ=255)
                                                                                                                                                  tCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCACGCTTg    <  2:2373927/150‑1 (MQ=255)
                                                                                                                                                    gggTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCACGCTTGGc  <  2:455566/150‑1 (MQ=255)
                                                                                                                                                    gggTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCACGCTTGGc  <  1:3563004/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
ACAACCAGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCACGCTTGGC  >  NC_002947/1531128‑1531425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: