| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,566,195 | A→T | 5.1% | intergenic (‑312/‑168) | PP_1374 ← / → pcaR | hypothetical protein/pca regulon transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,566,195 | 0 | A | T | 5.1% | 401.4 / 7.9 | 118 | intergenic (‑312/‑168) | PP_1374/pcaR | hypothetical protein/pca regulon transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (51/61); new base T (2/4); total (53/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
AATTTACGCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCACGAACCGG > NC_002947/1566048‑1566342 | tttACGCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGc < 2:301325/150‑1 (MQ=255) tttACGCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGc < 2:301073/150‑1 (MQ=255) tttACGCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGc < 2:1098680/150‑1 (MQ=255) cGCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAgg > 2:749971/1‑150 (MQ=255) cGCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAgg < 2:5402859/150‑1 (MQ=255) gCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCTTTCGGCGAGGc < 1:502030/150‑1 (MQ=255) cTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGc < 1:1779131/150‑1 (MQ=255) aCATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTg < 2:2816823/150‑1 (MQ=255) aCATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTg < 1:2202091/150‑1 (MQ=255) atcatcTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTggg > 2:946773/1‑150 (MQ=255) atcatcTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTggg > 1:2420171/1‑150 (MQ=255) atcatcTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTggg > 1:2197831/1‑150 (MQ=255) atcTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGAc > 2:4557504/1‑150 (MQ=255) atcTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGAc > 2:4669351/1‑150 (MQ=255) atcTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGAc < 1:1714846/150‑1 (MQ=255) tcTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACt > 2:2079908/1‑150 (MQ=255) cTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACtt > 2:5423320/1‑150 (MQ=255) gTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACg > 2:1671288/1‑150 (MQ=255) gTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACg > 2:1671367/1‑150 (MQ=255) tAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACgg < 1:2150236/150‑1 (MQ=255) aaGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGt < 1:976429/150‑1 (MQ=255) aGTAGCAGATTGTGCCCGCGAACATTTGGGAACTTTCGTACAAAGTTTGAAAGGAATGGCGGATACAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACtgtg < 2:2058437/150‑1 (MQ=255) tAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTggg > 2:2234237/1‑150 (MQ=255) aGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGt < 2:2488818/150‑1 (MQ=255) gCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTa > 2:4931120/1‑150 (MQ=255) gCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTa > 1:3936975/1‑150 (MQ=255) cAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTAc < 1:1329228/150‑1 (MQ=255) cAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTAc > 1:927360/1‑150 (MQ=255) aTTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACg > 1:1605059/1‑139 (MQ=255) aTTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACg < 2:1605059/139‑1 (MQ=255) gCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAg > 2:2506240/1‑150 (MQ=255) cccGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGt < 1:3421458/150‑1 (MQ=255) ccGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGtc > 1:2802528/1‑150 (MQ=255) ccGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGtc > 2:1099485/1‑150 (MQ=255) cgcgAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGtct > 1:1404216/1‑150 (MQ=255) aaCAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTcc < 1:4677196/150‑1 (MQ=255) aCAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCa > 1:4761978/1‑150 (MQ=255) aGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCaaa < 1:3241815/150‑1 (MQ=255) ttGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAaaga < 1:4082590/150‑1 (MQ=255) tGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAaagaa < 2:2023506/150‑1 (MQ=255) ggACCTTTCGTACACAGGTTGCCAGGACTGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCACAGAAGc < 2:1298438/150‑1 (MQ=255) ggACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGc < 2:1298437/150‑1 (MQ=255) tttCGTACAAAGTTGGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACaa < 1:4686590/150‑1 (MQ=255) ttCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAg > 2:1916361/1‑150 (MQ=255) tCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGt > 1:2428775/1‑150 (MQ=255) gTACAAAGTTTGAAAGGACTGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTATGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTgg < 2:3371827/150‑1 (MQ=255) gTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTgg > 1:4355111/1‑150 (MQ=255) gTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTgg > 2:3248357/1‑150 (MQ=255) aCAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCa < 1:1916361/150‑1 (MQ=255) aaaGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCAt > 2:2478792/1‑149 (MQ=255) aaaGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCAt < 1:2478792/149‑1 (MQ=255) aaaGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATg > 2:1801393/1‑150 (MQ=255) tGAAAGGAATGGCGGATAGGAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAg < 2:921918/150‑1 (MQ=255) tGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGTAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCTGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAg < 2:1765409/150‑1 (MQ=255) tGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAg < 1:4277118/150‑1 (MQ=255) tGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAg < 1:4146049/150‑1 (MQ=255) aaaGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGt > 2:909627/1‑150 (MQ=255) aaaGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGt > 2:909557/1‑150 (MQ=255) aGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGtat < 2:4414211/150‑1 (MQ=255) gAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATaa > 2:4720314/1‑150 (MQ=255) ggCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCaa < 2:1965792/150‑1 (MQ=255) gATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATaa > 2:1939668/1‑142 (MQ=255) gATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATaa < 1:1939668/142‑1 (MQ=255) aGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTcggc < 1:5048237/150‑1 (MQ=255) tCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGt < 1:2504596/150‑1 (MQ=255) gTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCa > 1:4078950/1‑150 (MQ=255) gTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCa > 2:1620752/1‑150 (MQ=255) ttGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCaa < 2:3428688/150‑1 (MQ=255) tGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAAt > 1:5249145/1‑150 (MQ=255) tGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGa < 1:818347/150‑1 (MQ=255) tCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCaaaa < 1:1291896/128‑1 (MQ=255) tCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCaaaa > 2:1291896/1‑128 (MQ=255) tCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGAtt > 1:3304801/1‑150 (MQ=255) cAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTa < 2:1404216/150‑1 (MQ=255) gggcgggcCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATc > 1:4247940/1‑150 (MQ=255) ggcCTTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCg < 1:4901024/150‑1 (MQ=255) tcttggttGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGt < 1:1416635/143‑1 (MQ=255) ccGGAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACGTCTACGGTGGGTACCTGACCAGTCTCTCCAACGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGtt < 1:3222732/150‑1 (MQ=255) aTGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTc < 2:3135307/150‑1 (MQ=255) tGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTACAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCg > 2:5175947/1‑150 (MQ=255) gAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGa < 1:4132942/150‑1 (MQ=255) gAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGa > 1:2928794/1‑150 (MQ=255) aaaaCGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATa < 1:749971/150‑1 (MQ=255) aCGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATc < 1:4492547/150‑1 (MQ=255) ggCCTCGCCTTTCGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGc < 1:2571679/122‑1 (MQ=255) ggCCTCGCCTTTCGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGc > 2:2571679/1‑122 (MQ=255) ggCCTCGCCTTTCGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGa > 1:1308665/1‑124 (MQ=255) ggCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAaagaa < 2:2294931/71‑1 (MQ=255) ggCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAaagaa > 1:2294931/1‑71 (MQ=255) ccTCGCCGAACGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCAc < 2:4959490/150‑1 (MQ=255) tCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCACGa > 1:3384020/1‑150 (MQ=255) gCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCACGacc > 2:3630662/1‑148 (MQ=255) gCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCACGAAc > 2:4712744/1‑150 (MQ=255) gCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCACGAAc < 1:4794740/150‑1 (MQ=255) gCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCACGAAc > 2:3267466/1‑150 (MQ=255) gAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCACGAACCgg < 1:4931120/150‑1 (MQ=255) gAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCACGAACCgg > 2:3068593/1‑150 (MQ=255) gAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCACGAACCgg > 1:807725/1‑150 (MQ=255) aaaGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTGCGATTATCGAACAAAcggc < 1:2037469/149‑4 (MQ=255) aaaGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTGCGATTATCGAACAAAcggc > 2:2037469/1‑146 (MQ=255) | AATTTACGCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCACGAACCGG > NC_002947/1566048‑1566342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |