| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,703,292 | G→C | 19.9% | intergenic (+99/‑68) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,703,292 | 0 | G | C | 19.9% | 339.7 / 79.9 | 155 | intergenic (+99/‑68) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (77/47); new base C (20/11); total (97/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.12e-01 | |||||||||||
Only 100 of 155 total aligned reads displayed.
GTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAA > NC_002947/1703145‑1703439 | cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑tt < 2:206848/150‑1 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑tt < 2:2381460/150‑1 (MQ=255) cGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑ttt < 2:5346490/150‑2 (MQ=255) aTCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tttgt < 2:3079375/150‑4 (MQ=255) aTCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCCCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tttgt < 1:5075275/150‑4 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGa < 2:3034073/150‑1 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTa > 1:4642249/1‑147 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGa > 2:3034229/1‑150 (MQ=255) gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCCCGCCGACAAAGGCC‑GTGTTggg > 1:1096182/1‑149 (MQ=255) cgtcGTCATCCTGGTCCCGCACATGCGTCCGCAGGGCTGTGTGAGCTGAACGTGCCGCCTTTCGAGGCTGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCGT‑TTGTAGGAg < 2:1850952/147‑1 (MQ=37) cgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAg < 1:1293746/150‑1 (MQ=255) gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑c < 1:3948433/150‑1 (MQ=255) aCGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAG‑Cg < 1:1969764/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAG‑Cgg < 2:5053694/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAG‑Cgg < 1:3324959/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑Cgg < 1:675440/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑Cgg < 1:4689572/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑Cgg < 2:1119101/150‑1 (MQ=255) cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑Cgg < 2:5245058/150‑1 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAATCCCGCTCCTACCAAGGCC‑TTGTAGGAG‑CGGGTTTa > 2:3108428/1‑150 (MQ=255) tCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCCCGCCAACAAAGGCC‑GTGGTGGAG‑CGGGGTTa > 1:1115784/1‑150 (MQ=255) gCACTTGCGTCCGCAGGCCTTAGTGAGCTGAACGCGCCGCCTTTCGAGGCGGATTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGAAAACCCGCTCCTACAAAGGCA‑TTGTAGGTG‑CGGGTTTACCCGCGAAgg < 2:1696368/150‑1 (MQ=255) aTGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑GGGTAGGAG‑CGGGTTTACCCGCGAAGGGGcc > 2:2305252/1‑150 (MQ=255) aTGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCCCTCCGACAAAGGCC‑GTGTAGGAG‑CGGGTTTACCCCCGAAGGGGcc > 2:1357910/1‑150 (MQ=39) aTGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCCCACCGACAAAAGCC‑GTGTGGGGG‑CCGGTTTTACCCCGGAGGGGcc > 1:150126/1‑150 (MQ=255) gtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACACGCGAAGGGGCCAGCACTGACGAAACAccc > 1:521017/1‑150 (MQ=255) aaCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTAGCGGGTAAACCCGCTCCGACAAAGGCC‑TTGTAGGAG‑CGGGTTTAACCGCGAAGGGGCCAGCACAGACGAAACACACCCAAGAgg > 2:1847138/1‑150 (MQ=255) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTTAAACCCCTCCGACAAAAGCC‑GTGTTGGGG‑CGGGTTTTCCCCCGCAGGGGCCAGCACAGACGAAAAACCCCCAGGAGGGAtac > 1:3460442/1‑148 (MQ=255) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTTAAACCCCACCTACAAAAGCC‑GTGTGGGGGCCGGGTTTA‑CCGCCTAGGGGCCAGCACGGACGAAACACCCCCCAGATGTATcc > 1:3392362/1‑150 (MQ=255) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑GGGTAGGAG‑CGGGTTTACCCGCGCGGGGGCCAGCACTGACGAAACACCCCCAGGAGGTATcc > 2:3160519/1‑150 (MQ=38) ccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTAAGTACGGGCCTCTTCGCGGGTAAACCCGCTCCAACAAAGGCC‑TTGTTGGAG‑CGGTTTTCCCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATccc < 2:5111708/150‑1 (MQ=38) gccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAAGGCC‑TTGTAGGAG‑CGGGTTTAc > 1:1558507/1‑103 (MQ=255) gccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTAc < 2:1558507/103‑1 (MQ=255) gccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGCCCTCTTCGCGGGTAAACCCGCTCCTCCACAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATccccc < 2:2242858/150‑1 (MQ=255) cTTTCGAGGCGGCTTTTTCTTGCCTTAAGCTTTTTGTTGTCAGTACCGGCCTCTTCGGGGGTAAACCCGCTCCTACAACGGCC‑TTGTTGTTG‑GGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGt < 2:5101224/150‑1 (MQ=38) ttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGa < 2:5309311/150‑1 (MQ=255) gcggcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTAcc > 1:4848541/1‑94 (MQ=255) gcggcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTAcc < 2:4848541/94‑1 (MQ=255) cTTTTTCGTGCCCGCAGATTTATGTTGTCAGTCCCGGCCTCTGCGCGGGTAAACCCGCGCCAACAACGGCG‑TTTTCGTTG‑CGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCAt < 2:2850219/150‑1 (MQ=255) cTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGa < 2:3981126/150‑1 (MQ=255) ttGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACAGACGAAACACCCCCATGAGGTATCCCCCCTGACACCCGCCATGCCTGAc > 1:3615930/1‑150 (MQ=255) ttGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCGCTCCGACAAAGGCC‑GTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACAGACGAAACACCCCCATGAGGTATCCCCCCTGACACCCCCCAAGCCTGAc > 1:3629886/1‑150 (MQ=37) cTGATGCTTTTGTTTGTCAGTACCGGCCTGTTCGGGGGTAACCCCGCACCTACAAAGGCT‑TTGTAGGAG‑GGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAg < 1:4941108/150‑1 (MQ=255) tGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑GTGTAGGAG‑CGGGTTTAACCGCGGAGGGGCCCGCACTGACGAAACACCCCCATGAGGTATCCCCCGGGACACCCGCCAAGCCTGACCAAgg > 2:5032605/1‑150 (MQ=38) cTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGcgccg > 2:4893756/1‑150 (MQ=255) tttATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCGCCCACCAAGGCC‑CGGGGGGCG‑CGGGGTTGCCCGCGCAGGGGCCCGCCCAGACGAAACACCCCCCAGAGGTATCCCCCCAGACACCCCCCCAGCCAGCCCCAGGcgccgc > 2:1442384/1‑150 (MQ=255) gttcgtCAGTGCTGGCCCCTTCGCGGGTCAACCCGCTCCTACAAGGCCG‑GTGTAGGAG‑GGGGTGTACCCGCGAAGAGGCCGGTCCGGGCAAAAAACCCCCATGAGGTATCCCCCGGGACACCCGCCATGCCGGACCAAGGCGCCGCCggg > 1:2706932/5‑149 (MQ=9) tgtCAGTCCCGGCCTCTTCGCGGGTAACCCCGCTCCTACAAAGGCC‑TTGTAGGAG‑GGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATc < 1:1279045/150‑1 (MQ=255) tCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGTAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGc > 2:3010402/1‑150 (MQ=255) tCAGTACCGGCCTCTTCGCGGGGAAAACCGCTCCTAAAAAGGGC‑GTTTAGGAG‑CGGGGGTTACCGCGAAGGGGCCCGCACGGACGAAACACCCCCATGGGGTATCCCCCCTGCCACCCCCCCAGCCAGCCCAAGGCGCCGCCGGCATCGc > 2:653147/1‑150 (MQ=255) ttcccGGCCTCTTGGGGGTTAAACCCGCCCCTCCAACGGCG‑TTGTTGGTG‑GGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCAc < 1:3973874/147‑1 (MQ=255) tACCGGCCTCTTCGCGGGTTAACCCCCTCCAAAAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCCCGAAGGGGCCAGCACTGACCAAACACCCCCATGAGGTATCCCCCCTGACCCCCGCCAAGCCTGACCAAGGCGCCGCCGGCATCGCCAcc > 2:4189504/1‑150 (MQ=38) ccTCTTCGCGGGTAAACCCCCTCCAACACCGGCC‑TTGTCGGAG‑CGGGTTTCCCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTc < 1:450063/150‑1 (MQ=255) tctTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGc > 2:5263828/1‑150 (MQ=255) gggTAAACCCGCTCCAACACAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGc < 2:3400067/150‑1 (MQ=255) ggTAAACCCGCTCCTACAACGGCG‑TTGTCGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCg < 2:1096182/150‑1 (MQ=255) ggTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCg > 1:2597455/1‑150 (MQ=255) ggTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCg > 1:4531644/1‑150 (MQ=255) gTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGAc < 2:1131405/63‑1 (MQ=255) gTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCg > 1:833681/1‑128 (MQ=255) gTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCg < 2:833681/128‑1 (MQ=255) tAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACGCCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 2:984384/1‑150 (MQ=255) aaaCCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc > 2:3823538/1‑150 (MQ=255) aaCCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCACGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAACGCGTGCa > 2:2835379/1‑150 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCgctcggc > 1:970153/1‑144 (MQ=255) cccGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 2:2153878/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAG‑CGGGTTTACCCGCGATGAGGCCGGTACTGACAAATCACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:2641103/1‑150 (MQ=25) ccGCTCCTACAAGGCCT‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCACTa > 1:4913746/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:340371/1‑150 (MQ=255) ccGCTCCTACAAGGCCT‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:3927884/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCCCCGCCGTCGCCGAAAGCGTGCAATa > 1:2848960/1‑150 (MQ=255) ccGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGAATCCCCCGAGACACCCGCCATGCCTGACCAAGGCGCCGCCCGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:5028318/1‑150 (MQ=255) ccGCTCCTACAAACGCC‑TTGTAGCAG‑CGGGATTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa < 2:3151015/150‑1 (MQ=255) cGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTTGCCGAAAGCGTGCAATAc > 1:3244006/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:444835/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:5221342/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:444537/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:3986705/1‑150 (MQ=255) gCTCCTACAAGGCCT‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:2493841/1‑150 (MQ=255) cTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCa > 1:394586/1‑150 (MQ=255) tCCTACAAGGCCT‑TTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:239938/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:3715603/1‑150 (MQ=255) tCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:2963276/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 2:5410669/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:1160770/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2555138/1‑150 (MQ=255) cTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2554983/1‑150 (MQ=255) tACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 2:2084568/1‑150 (MQ=255) tACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 2:2923102/1‑150 (MQ=255) cAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa > 2:1873687/1‑139 (MQ=255) cAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa < 1:1873687/139‑1 (MQ=255) cAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGGCGCCGCACGCGTGCAATACCAAGGCCg > 2:3630846/1‑150 (MQ=255) acaaGGCCTTTGTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGcc > 1:1228143/3‑150 (MQ=38) aaaGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 1:180864/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:5298381/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:4660431/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:4660411/1‑150 (MQ=255) aaaGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 1:485473/1‑150 (MQ=255) aGGCC‑TTGTAGGAG‑GGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa < 1:3104232/150‑1 (MQ=255) aGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa < 1:2153878/150‑1 (MQ=255) | GTCGATCCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAA > NC_002947/1703145‑1703439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |