| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,703,328 | C→T | 5.5% | intergenic (+135/‑32) | lysS → / → PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,703,328 | 0 | C | T | 5.5% | 507.0 / 10.8 | 161 | intergenic (+135/‑32) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (110/42); new base T (6/3); total (116/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 165 total aligned reads displayed.
GCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGCCAGTTGA > NC_002947/1703184‑1703477 | gccggCCTGAGTGCGCTGACCGCGCCGCCTTGCGCGGCGGCTTTTTCGTGCCTGCAGCTTTAGGTGGTCCGGGCGGGCCCCTGCGCGGGTAAACCCGCTCCT‑CCACGGCCTTGGTGGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTACTGa < 2:5328925/147‑1 (MQ=9) gtgagCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACACGCGAAGGGGCCAGCACTGACGAAACAccc > 1:521017/1‑150 (MQ=255) tGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTAACCCCGAAGGGGCCAGCACTGACGAAACACCCCCAAGa > 2:3019297/1‑150 (MQ=255) aaCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTAGCGGGTAAACCCGCTCCGACAAAGGCCTT‑GTAGGAG‑CGGGTTTAACCGCGAAGGGGCCAGCACAGACGAAACACACCCAAGAgg > 2:1847138/1‑150 (MQ=255) aCGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGt > 2:4979903/1‑150 (MQ=255) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTTAAACCCCTCCGACAAAAGCCGT‑GTTGGGG‑CGGGTTTTCCCCCGCAGGGGCCAGCACAGACGAAAAACCCCCAGGAGGGAtac > 1:3460442/1‑148 (MQ=255) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTTAAACCCCACCTACAAAAGCCGT‑GTGGGGGCCGGGTTTA‑CCGCCTAGGGGCCAGCACGGACGAAACACCCCCCAGATGTATcc > 1:3392362/1‑150 (MQ=255) gccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGTAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATcc > 2:3160243/1‑150 (MQ=255) ttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGa < 2:5309311/150‑1 (MQ=255) gggggatttttCTTGCCTTAAGCTTTTTGTTGTCTGTACCGGCCTCTTGGGGGTTAAACCCGCCCATAAAAAGGCCTT‑TTAGGCG‑GGGTTTTACCCGCGAAGGCGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACAccc < 2:1115784/144‑1 (MQ=255) cTTTTTCGTGCCCGCAGATTTATGTTGTCAGTCCCGGCCTCTGCGCGGGTAAACCCGCGCCAACAACGGCGTT‑TTCGTTG‑CGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCAt < 2:2850219/150‑1 (MQ=255) cTTGCCTGATGCTTTATGTTGTCAGTACCGGCCTCTCCGCGGGTAAACCCGCTCCTACACAGGCCTT‑GTTGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGa < 2:3981122/150‑1 (MQ=255) ttGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACAGACGAAACACCCCCATGAGGTATCCCCCCTGACACCCGCCATGCCTGAc > 1:3615930/1‑150 (MQ=255) ttGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAAACCGCTCCGACAAAGGCCGT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACAGACGAAACACCCCCATGAGGTATCCCCCCTGACACCCCCCAAGCCTGAc > 1:3629886/1‑150 (MQ=37) ccTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACACGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCaa < 2:521017/150‑1 (MQ=255) cTGATGCTTTTGTTTGTCAGTACCGGCCTGTTCGGGGGTAACCCCGCACCTACAAAGGCTTT‑GTAGGAG‑GGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAg < 1:4941108/150‑1 (MQ=255) cTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCGT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACGGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAg > 2:1949462/1‑150 (MQ=255) tGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCGT‑GTAGGAG‑CGGGTTTAACCGCGGAGGGGCCCGCACTGACGAAACACCCCCATGAGGTATCCCCCGGGACACCCGCCAAGCCTGACCAAgg > 2:5032605/1‑150 (MQ=38) cTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGcgccg > 2:4893756/1‑150 (MQ=255) gttcgtCAGTGCTGGCCCCTTCGCGGGTCAACCCGCTCCTACAAGGCCGGT‑GTAGGAG‑GGGGTGTACCCGCGAAGAGGCCGGTCCGGGCAAAAAACCCCCATGAGGTATCCCCCGGGACACCCGCCATGCCGGACCAAGGCGCCGCCggg > 1:2706932/5‑149 (MQ=9) ttgtCAGTACCGGCCTCTTCGCGGGTAAAACCCCGCCGACAAAGGCCGG‑GGAGGAG‑CGGGGTTTACCGCGGAGGGGGCCGCACTGACGAAACAACCCCCTGGGGTATCCCCCCGGTCACCCCCCCTGCCGGACCCACGCGCCGCCGGCag > 1:3962518/1‑149 (MQ=255) tgtCAGTCCCGGCCTCTTCGCGGGTAACCCCGCTCCTACAAAGGCCTT‑GTAGGAG‑GGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATc < 1:1279045/150‑1 (MQ=255) tCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGTAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGc > 2:3010402/1‑150 (MQ=255) ccTCTTCGCGGGTAAACCCCCTCCAACACCGGCCTT‑GTCGGAG‑CGGGTTTCCCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTc < 1:450063/150‑1 (MQ=255) ttCGCGGGTAAACCCGCTCCTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGGCGCCg > 2:2667147/1‑150 (MQ=255) ttCGCGGGTAAAACCGCTCCGACAAAGGCCGT‑GTAGGAG‑CGGGGTTACCCGCGAAGGGGCCAGCACTGACGAAAAACCCCCAAGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCCTCGCCACCGCCGTCGccc > 2:6137/1‑149 (MQ=255) gggTAAACCCGCTCCAACACAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGc < 2:3400067/150‑1 (MQ=255) gTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGAc < 2:1131405/63‑1 (MQ=255) gTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGAc > 1:1131405/1‑63 (MQ=255) gTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCg > 1:833681/1‑128 (MQ=255) gTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCg < 2:833681/128‑1 (MQ=255) gTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGt > 2:5106414/1‑150 (MQ=255) tAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACGCCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 2:984384/1‑150 (MQ=255) aaaCCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc > 2:3823538/1‑150 (MQ=255) aCCCGCTCCTACAACGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa < 2:3499092/150‑1 (MQ=255) cccGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCgctcggc > 1:970153/1‑144 (MQ=255) cccGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 2:2153878/1‑150 (MQ=255) cccGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 1:470550/1‑150 (MQ=255) ccGCTCCTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:912033/1‑150 (MQ=255) ccGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCCCCGCCGTCGCCGAAAGCGTGCAATa > 1:2848960/1‑150 (MQ=255) ccGCTCCTACAAACGCCTT‑GTAGCAG‑CGGGATTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa < 2:3151015/150‑1 (MQ=255) gCTCCTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:2493841/1‑150 (MQ=255) gCTCCTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:444835/1‑150 (MQ=255) gCTCCTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:444537/1‑150 (MQ=255) gCTCCTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 2:3986705/1‑150 (MQ=255) tCCTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:229980/1‑150 (MQ=255) tCCTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:2921136/1‑150 (MQ=255) tCCTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:1252792/1‑150 (MQ=37) tCCTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:239938/1‑150 (MQ=255) tCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:3715603/1‑150 (MQ=255) tCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:2963276/1‑150 (MQ=255) cTACAAGGCCTTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACTGCCGTCGCCGAAAGCGTGCAATACCAAgg > 2:4020534/1‑150 (MQ=255) cTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2555138/1‑150 (MQ=255) cTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:2554983/1‑150 (MQ=255) cTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg > 1:1160770/1‑150 (MQ=255) tACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 2:4789016/1‑150 (MQ=255) tACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 2:2084568/1‑150 (MQ=255) tACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 1:1488246/1‑150 (MQ=255) aaaGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:4660411/1‑150 (MQ=255) aaaGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:5298136/1‑150 (MQ=255) aaaGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 1:180864/1‑150 (MQ=255) aaaGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 1:673021/1‑150 (MQ=255) aGGCCTT‑GTAGGAG‑GGGTTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa < 1:3104232/150‑1 (MQ=255) aGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCaa < 1:2153878/150‑1 (MQ=255) gccttt‑GTAGGAG‑CGGGTTTACCCGCGAAGAGGCCGGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATc < 2:5055350/104‑1 (MQ=37) ttt‑GTAGGAG‑CGGGTTTACCCGCGAAGAGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCAGCCATGCCTGACCATGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACt > 2:250026/2‑150 (MQ=255) cTT‑GTAGGAG‑GGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACt < 1:5349726/150‑1 (MQ=255) cTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACt > 2:3084861/1‑150 (MQ=255) tt‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTg > 1:3804100/1‑150 (MQ=255) t‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGc > 2:4606581/1‑150 (MQ=255) ttcg‑CGGGTAAACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGc > 2:4334252/4‑150 (MQ=255) gAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGcc > 2:3239976/1‑150 (MQ=255) gAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGcc > 2:5159873/1‑150 (MQ=255) gAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGcc > 1:3183304/1‑150 (MQ=255) gAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGcc > 1:4256799/1‑150 (MQ=255) g‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCac > 1:3328873/1‑149 (MQ=255) g‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCaa > 2:2728604/1‑150 (MQ=255) gggTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAgg < 1:4893756/150‑1 (MQ=255) ggTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGc > 1:4921858/1‑150 (MQ=255) gTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCa > 1:1786138/1‑150 (MQ=255) gTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCa > 2:830509/1‑150 (MQ=255) gTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGGCTCCCCCGTGACACACGACATGCCTGACCACGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAGACCACGGCCGCAAGACTGCCCGCCAAGGcc > 2:2639898/1‑149 (MQ=255) cccGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGaa < 1:3099371/150‑1 (MQ=255) cccGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGaa < 2:1870990/150‑1 (MQ=255) ccGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAAc < 1:3823538/150‑1 (MQ=255) ccGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAAc > 2:3835663/1‑150 (MQ=255) ccGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAAc > 1:3579561/1‑150 (MQ=255) cgcgAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACa < 1:1930689/150‑1 (MQ=255) gcgAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAg < 1:3087358/150‑1 (MQ=255) gcgAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAg > 2:1356739/1‑150 (MQ=255) cgAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCACGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGc < 1:3108428/150‑1 (MQ=255) gggCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGc > 1:82790/1‑150 (MQ=255) gggCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGc < 1:3359581/150‑1 (MQ=255) gCCGGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGCCa > 2:4745226/1‑150 (MQ=255) gCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGCCa < 1:3034229/150‑1 (MQ=255) gCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGCCa < 1:4606581/150‑1 (MQ=255) ccAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGCCAg > 1:2049173/1‑150 (MQ=255) aGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACTGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGCCAGtt < 1:4020534/150‑1 (MQ=255) aGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGCCAGtt < 1:4998854/150‑1 (MQ=255) cACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGCCAGTTGa < 1:4979903/150‑1 (MQ=255) | GCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCCTT‑GTAGGAG‑CGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAAGACTGCCCGCCAAGGCAGCGAACAGCGTCGCCAGTTGA > NC_002947/1703184‑1703477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |