| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,065,158 | A→C | 24.5% | intergenic (+50/‑157) | PP_1838 → / → PP_1839 | membrane protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,065,158 | 0 | A | C | 24.5% | 134.9 / 44.1 | 85 | intergenic (+50/‑157) | PP_1838/PP_1839 | membrane protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (26/34); new base C (10/10); total (37/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 | |||||||||||
CCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGG > NC_002947/2065009‑2065305 | ccAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCa < 1:3130594/150‑1 (MQ=255) gAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGcaca < 2:2255114/150‑1 (MQ=255) gAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGcaca < 1:5229656/150‑1 (MQ=255) tGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAATACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAATCGCGGGC‑TTGCCCGCTCCCACACGCATTGCACAGGGt > 2:4016366/1‑150 (MQ=255) tGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGt > 2:4252838/1‑150 (MQ=255) tGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGt < 1:3255528/150‑1 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTTCACAGGGttag > 2:138342/1‑148 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCg > 1:4505081/1‑150 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCg > 1:4444158/1‑150 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTACCACAGGCCTTGCACAGGGTTCg > 2:2093762/1‑150 (MQ=255) cAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCgg < 1:1192747/150‑1 (MQ=255) cAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCgg < 1:3950903/150‑1 (MQ=255) aagaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGa > 2:4490103/1‑150 (MQ=255) agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCtt < 1:3275270/150‑1 (MQ=255) agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCtt < 1:613688/150‑1 (MQ=255) agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCtt < 1:3100260/150‑1 (MQ=255) agCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCtt < 1:3140487/150‑1 (MQ=255) gCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTtg < 1:474917/150‑1 (MQ=255) tGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTtgtg < 1:1360081/150‑1 (MQ=255) aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAgg < 1:3258848/150‑1 (MQ=255) aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAgg < 2:4031745/150‑1 (MQ=255) aGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCaat < 2:2191323/150‑3 (MQ=37) gCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCaatg < 1:1614006/150‑4 (MQ=25) cGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCaatgc < 1:3328640/150‑5 (MQ=25) cGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCACTGCACAAGGTCCGAACCCTGTGCaatgc < 1:4276591/150‑5 (MQ=37) gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCAATCGCGGGC‑TTGCCCGCGCCCCCCGGCAATGCCCAGGGTTCGGACCTTGTGCAGGtgc > 2:1053812/1‑148 (MQ=255) atCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCtgtg < 2:1735466/150‑1 (MQ=21) atCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCtgtg < 2:4695404/150‑1 (MQ=21) atCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtgtg < 1:3062543/150‑1 (MQ=255) atCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAAGGTCCGAACCCTGTGCAATGCCtgtg < 2:3513027/150‑1 (MQ=37) tCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCGTTGCACAGGGTTCGGACCTTGTGCAGGTCCtgtgg > 2:4516830/1‑149 (MQ=255) ccAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGc < 1:3446003/149‑1 (MQ=255) ccAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGc > 2:3446003/1‑149 (MQ=255) cAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCtgtgg < 1:1209699/148‑2 (MQ=18) cAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCtgtgg > 2:1209699/1‑147 (MQ=18) ggACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGG‑GTGCCCGCGCCCCCAGGCAGTGGGCACGGTTCGGGCCATTTGCAGGGCCGGGGCggg > 1:1247884/2‑148 (MQ=255) aGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGG‑GTGGCCGCGCCCCCAGGCCATGGACAGGGTTGGGGCCGTGTGCCGGGCCGGGGCgcg > 1:3458291/1‑148 (MQ=255) gACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGc < 1:3469921/150‑1 (MQ=18) gACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGCGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGc < 2:4729617/150‑1 (MQ=18) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg < 2:3794759/150‑1 (MQ=18) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCgg < 2:4478153/150‑1 (MQ=18) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg < 1:1034005/150‑1 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCgg < 2:4174862/150‑1 (MQ=255) gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGGTCGGACCGTGTGCAGGGACGGGGCGAGCGGGccc > 1:3104254/1‑148 (MQ=39) aaGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑GTTCCCGCTCCCACAGGCCTTGGACAGGGTTCGGACCTTGTGCAGGTGCAGTGCGAGCGGGCCAGccc > 2:1427903/1‑150 (MQ=255) gagCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGA‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCcgc < 1:2677264/150‑1 (MQ=255) agCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCGTTGCCC‑CGCCCACAGGCAGTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGGGGGCGGGCCAGCCcgcg > 2:941383/1‑150 (MQ=255) tgctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCtt > 1:5182369/1‑114 (MQ=255) tgctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCtt < 2:5182369/114‑1 (MQ=255) gctgGATAACACCGCCGGCGTGGTGCCCGGCACACCTAATTAAACCGGGGCCGCGTTGCGGCCCATTCGGGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCTGGTCGTGTGCGAGCGGGCAAGCCCGCGAATgg < 2:1448560/150‑1 (MQ=38) gctgGATAACACCGCCGGCGTGGTGCAGGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACGTTGTGCAGGTCCTGTGCGAGGGGGCAAGCCCGCGAATgg < 2:1448591/150‑1 (MQ=255) tgGATAACACCGCCGGCGTGGTGCATGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTAGCGGGG‑TTTGCCGCTCCCAAAGGGATTTGACATGGTTTGGTACTTTTTGAGGTGCTGTGGGAGCGGGGAATCCCGCGTATGGGc > 2:1510131/1‑150 (MQ=255) acCGCCGGCGTGGTGCACGGCACACCCAAGTAAACCGGGGCCGCGTTGCGGCCCATACGCGGGC‑TTTACCCCACCCCAAGCCCAAGCACAGCGGTCGGACCATGTGCAGGTACTGAGCGGGCGGGCAAACCCCAGCCTTGGCCCCGcaca > 2:2784536/1‑150 (MQ=255) gtgCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGGCCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGAc > 2:3986007/1‑150 (MQ=255) cacCGAAGTAAACGGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCTGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTAt < 2:937462/150‑1 (MQ=255) tAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGccc > 2:5433581/1‑150 (MQ=255) ccGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTTCCCGCTCCCACACGCAGTGCACAGGGTTCGGACCTTGTGCAGGTCCGGTGCGAGCGTGCAAGCCCGCGACTGGGCCCCCCACAATTTTCCCGGGCTGAACAATATACCCGccccccg > 2:3743792/1‑147 (MQ=255) ccGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCCCGCCCCCAGGCCGTGCGCCGGGGTCGGGCCGTGTGCAGGGCCGGGGCGCGCGGGCCCGCCCGCGCCTGGGCCCCGCACCAGTTTACCCGCCGGAACAGTATAccccccccccg > 2:3411198/1‑147 (MQ=255) ggCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACCGGCATTGCACAGGGTTCGGACCTTGTGCTGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCa < 2:3674742/150‑1 (MQ=255) gcccggtttGCCGCCCTTGCGGGGGC‑TGCCCCCCACCCCCCGGCATGGCACGGGGTTCGGACCTGGCGCCGGTCGGGGGCCCGGGGCCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCa < 1:5154777/143‑1 (MQ=255) gCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAg < 2:3949793/150‑1 (MQ=255) tggggCCCATGCGCGGGG‑TGCCCCGCCCCCACCGTATTTGCACTGGGTTCGGACGTTGTGCTGGTCGTGGCCGCGCGGCCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCa < 1:1427903/147‑1 (MQ=255) ggggCCAATTCGGGGGG‑TGGCCCGCTCCCCCTGGCTTTGCACTGGGTTCGGACCTTGGGCTGGTCGTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAg < 1:383873/148‑1 (MQ=255) gCCCTTCCGCGGGC‑TGGCCCGCCCCCACCGCCTTTGCCCCGGTTTCGGACCTTGGCCTGGGCCGGTGCGAGCGGCCAACCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCa < 1:3893690/150‑1 (MQ=255) gCCCATTCGCGGGC‑TTGCCCGCTCCCAACGGCCTTGCCCAGGGGTCCGACCTTGTGCAGGTCCTGTGCGAGCGGGCAATCCCGCGAAAGGGCCCCCCACAAATTTCCCCGACTGAACAATAAACCCGCCCCACCGTCACTTATTCAGGCa > 2:4571565/1‑150 (MQ=25) cccATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCAt < 2:3049676/150‑1 (MQ=255) cccATGGGCGGGC‑TGGCCCGCCCCCCCCGGCTGTGCCGGGGGTTGGGCCCTTGTGCCGGCCGTGGGCGCGGGGGCACGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCAt < 1:3411198/150‑1 (MQ=255) ccATTCGCGGGC‑TTGCCCGCTCCCCCAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATc < 2:4820741/150‑1 (MQ=255) ccATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTc < 1:475741/60‑1 (MQ=255) ccATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTc > 2:475741/1‑60 (MQ=255) ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg > 1:4068295/1‑150 (MQ=18) ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg > 2:4437681/1‑150 (MQ=18) ccGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg > 2:1694587/1‑150 (MQ=18) ccGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCg > 2:1680653/1‑150 (MQ=255) gCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt > 2:3689783/1‑150 (MQ=255) cccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCTAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGAc < 2:5103324/150‑1 (MQ=255) ccACAGGCATTGCACAGGGTTCGTACCTTGTGCAGGACCTGTGCGAGCGGGCAAGCCCTCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACt < 2:427534/150‑1 (MQ=255) ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACt > 2:5016117/1‑150 (MQ=255) ccACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACt > 1:885737/1‑150 (MQ=255) cacaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTg > 2:4868502/1‑150 (MQ=255) acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTga > 1:3335894/1‑150 (MQ=255) acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTga > 1:45022/1‑150 (MQ=255) acaGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTga > 2:5221035/1‑150 (MQ=255) agcaaTTCCAAAGTGTTCTCACATTGTCCACGACCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAACGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTgaga < 2:1005684/146‑1 (MQ=255) aGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTgaga > 2:740484/1‑150 (MQ=255) gCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAgg < 2:3390125/150‑1 (MQ=255) gCATGGCACTGGGGCCGGCCCTTGGGCCGGGCGGGGGCGAGCGGGCACCCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAgg < 1:2549657/150‑1 (MQ=255) | CCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC‑TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGG > NC_002947/2065009‑2065305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |