| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,080,228 | A→C | 11.5% | intergenic (+48/+67) | PP_1853 → / ← PP_1854 | LysR family transcriptional regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,080,228 | 0 | A | C | 11.5% | 270.1 / 2.5 | 111 | intergenic (+48/+67) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (43/50); new base C (6/9); total (49/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.82e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 117 total aligned reads displayed.
AAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCA > NC_002947/2080079‑2080377 | aaGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCcaca > 1:1249533/1‑150 (MQ=255) gCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAgg < 1:3456641/150‑1 (MQ=255) gCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAgg < 1:3456606/150‑1 (MQ=255) gTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGat < 1:255879/150‑1 (MQ=255) gCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATc < 1:5009640/150‑1 (MQ=255) gCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATc < 1:3441249/150‑1 (MQ=255) ggCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCCCCCCCACCCACACGGGTAACACAg > 1:4828252/1‑150 (MQ=255) aaGACCCGGGCGTTCATGGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGTGAATTATTGCCTGTGCCGGCCTTTTCGCGGGGCCGGCCGCACCCAGAGGGATATGACTGccc > 2:2948787/1‑150 (MQ=255) ggCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACa < 2:3575368/150‑1 (MQ=255) gTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGACGACAGTg > 2:3561544/1‑150 (MQ=255) gTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTg < 1:3522251/150‑1 (MQ=255) gTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCAAAGCCCAGAAGACAggg > 2:3778190/1‑148 (MQ=255) gTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGAGGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTg < 2:4566892/150‑1 (MQ=255) aTCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCCCCCCCCCGGATATCACACCCCAGAAGACAGGGGGGt > 1:482049/1‑150 (MQ=255) aTCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGt > 2:861309/1‑150 (MQ=255) aTCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGt < 2:2721565/150‑1 (MQ=255) aTCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGt > 2:3603677/1‑150 (MQ=255) aTCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGAAAGTGGGGt > 2:3203197/1‑150 (MQ=255) aTCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCCCCCCCACCGGGGGATCACAGCCCAGAATAAAGGGGGGt > 1:1936857/1‑150 (MQ=255) ggcagcaactgctgggcaagcgggtggatgacgaggtgcacctgggcgcacaggtatcgttcattgtcgatgttgtctgaaccggccttTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTtgtg > 2:1830898‑M1/90‑150 (MQ=255) tgtgGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTgg < 2:948258/150‑1 (MQ=255) gcaactgctgggcaagcgggtggatgacgaggtgcacctgggcgcacaggtatcgttcattgtcgatgttgtctgaaccggcctcTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAg > 2:5006180‑M1/86‑150 (MQ=255) aactgctgggcaagcgggtggatgacgaggtgcacctgggcgcacaggtatcgttcattgtcgatgttgtctgaaccggccttTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcg > 2:3673515‑M1/84‑150 (MQ=255) aactgctgggcaagcgggtggatgacgaggtgcacctgggcgcacaggtatcgttcattgtcgatgttgtctgaaccggccttTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcg > 1:1807226‑M1/84‑150 (MQ=255) actgctgggcaagcgggtggatgacgaggtgcacctgggcgcacaggtatcgttcattgtcgatgttgtctgaaccggccttTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgg > 1:2634100‑M1/83‑150 (MQ=255) actgctgggcaagcgggtggatgacgaggtgcacctgggcgcacaggtatcgttcattgtcgatgttgtctgaaccggccttTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgg > 1:5359255‑M1/83‑150 (MQ=255) actgctgggcaagcgggtggatgacgaggtgcacctgggcgcacaggtatcgttcattgtcgatgttgtctgaaccggcctcTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgg > 1:2863855‑M1/83‑150 (MQ=255) gAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGGTATAACAGCCCTGAAGACAGTGGGGTCCATGTGGGGgcggg < 2:1510740‑M2/150‑6 (MQ=255) tgctgggcaagcgggtggatgacgaggtgcacctgggcgcacaggtatcgttcattgtcgatgttgtctgaaccggcctcTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggc > 2:933998‑M1/81‑150 (MQ=255) aGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggc > 2:2198776‑M2/1‑144 (MQ=255) aGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggc > 1:4651936‑M2/1‑144 (MQ=255) cAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgg > 1:2102313‑M2/1‑142 (MQ=255) cAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTAGTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgg > 2:3084055‑M2/1‑142 (MQ=255) gTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggc > 1:1762969‑M2/1‑140 (MQ=255) tttGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCAAATCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcc < 2:885198‑M2/150‑12 (MQ=255) gCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGGCCGCCCCCCCCCCCCCGGGTAGAACACCCCCGGAGACACGGGGGGGCGTGTGGGAGCGGGCGGGgcccc > 1:4584088/1‑148 (MQ=255) gAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaa < 2:2264395‑M2/150‑18 (MQ=255) ggtggatgacgaggtgcacctgggcgcacaggtatcgttcattgtcgatgttgtctgaaccggcctcTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggc > 2:3557619‑M1/68‑137 (MQ=255) ggtggatgacgaggtgcacctgggcgcacaggtatcgttcattgtcgatgttgtctgaaccggcctcTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggc < 1:3557619‑M1/70‑1 (MQ=255) gCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCTGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACCGCCCTGAATACAGTGGGTTCCTTGTGGGTGCGGGCGGGCCCGCGAaga < 2:322817/150‑1 (MQ=255) ctggggCTGGGGGGGGGGTTCGTTGCCCTGCTGGCCTTTTAGTTAATTATTGCCTGTGCGGGCCTTTTCGCGGGCCCGCCCGAACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGGGGGCGGGCCCGCGAagag < 2:2559028/148‑1 (MQ=255) ccggggCGGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGTGAATTATTGCCTGTGCCGGCCTTTGCGCGGGCCCGCCCGCACCCACCGGGATATCACCGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAagag < 2:3309666/148‑1 (MQ=255) cAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCCCACCCCCAGGGATATCACAGCCCAGAAGACACGGGGGGCCAGGTGGGAgcgggcgggcccgcgcggag < 1:3309666‑M2/150‑21 (MQ=255) ggCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTTGAGTCTTATGGCCGGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACCGGGTTATCACAGCCGTGAAGACCGTGGGGTCCTTGTGGGTGCGGGCGGGCCCGCGAAGAGGCCg < 2:2404258/150‑1 (MQ=38) tGGGGGGGGGTTTCGAGGCCGTGCAGGCCCTTTAGAGAATTTTTGCCTGTGCGGGCATTTACGGGGGCCGGCCCGAACCCACAGGTATATCACCGCCGTGAAGACCGTGGGTTCTTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGtt < 2:923748/150‑1 (MQ=255) tGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGtg > 2:3587080/1‑149 (MQ=255) ggggggggcggTTCTATGCCCTGCCGGCCCTTTTTTGATTTATTGCCGGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGtt < 2:2900498/146‑1 (MQ=255) gggcggggcggTTCGTTGCCCGGCTGGCCCTTTAGAGAATTTTTGCCTGGGCCGGCCTTTCCGCGGCCCCGCCCGCACCCACCGGTATATCACAGCCCTGAAGACCGTGGGTTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGtt < 2:1071242/149‑1 (MQ=255) ggTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCAGAAGACACAGGGGTCCTTGTGGGAGCGGGCGGGCCCCCGCAGAGGCCGGGTCAGacaaca > 1:3101551/1‑150 (MQ=255) tGCCCGGCAGGCCCTTTTGTGATTTTTTGCGTGTGCCGGCCTTTTCGGGGGCCCGCCCGCACCCACAGGTTTATCACCGCCCTGAAGACTGTGGGGTCGTTGTGGGTGGGGGGGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACaa < 2:139855/150‑1 (MQ=255) ccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACCGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGa < 2:1249533/150‑1 (MQ=255) ccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGAAAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGCAGAGGCCGGTTCAGACAACAACGACAATGa > 2:3910831/1‑150 (MQ=255) ctgctgGCCCTTTCGAGAATTATTGCCTGGGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACCGGGATATCACCGCCCTGATGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGaa < 2:5173537/150‑1 (MQ=255) cTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTATTCGCGGGCCCCCCCGCACCCACAGGCATATCAAAGCCCTGAAGACAGTGGGGTGCGTGGGGGAGCGGGCGGGCCCGCGAAGAGGCCGGGTCAGACAACATAGACaaacaa > 2:2075682/1‑146 (MQ=255) aaTTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCAACCACAGGGATATAAAAGCCCTGAAGACAGTGGGGTGCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCa > 2:3782081/1‑150 (MQ=255) cttagtGCCTGTGCCGGCCTTTTCGCGGGCCGGCCCGCACCCCCTGGTATATCTCCGCCGTGTAGACAGTGGGGTCGTTTTGGGTGCGGGGGGGGCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCGAg < 2:3025961/149‑1 (MQ=255) attattGCCTGTGCCGGCCTTTGCGCGGGCCCGCCCGCACCCACCGGGATATCACCGCCCTGACGACCGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAg < 2:1004524/150‑1 (MQ=255) tattGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGCAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGt > 2:2815157/1‑150 (MQ=255) tattGCCTGTGCCGGCCTTTTCGCGGGCCCCCCCGCAACCACAGGGCAAAAACAGCCCTGTAGACAGTTGGGTCCGTGTGGGAGCGGGCGTGCCCGCGAAGACGCCCCGTCAGACAACAACGACAATGAACGATACCTGTGCGCCCCGGt > 2:2815152/1‑150 (MQ=255) tGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACCGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCa < 2:5376014/150‑1 (MQ=255) gCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCAGAAGACAGTGGGGTGCGTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACAACGACAAAGAACGATACCTGTGCGCCCAGGTGCAc > 2:2072749/1‑150 (MQ=255) gCCTGTGCCGGCCTTTCGGCGGGCCCGCCCGCACCCCCGGGTATACCACCCCCCTGACGCCCGTGGGGCCGTGGGGGCAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCAc < 1:5056615/150‑1 (MQ=255) ccTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATAACAGCCCAGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGCGGCCGGTTCAGGCAACAAAGACAATGAACGATACCTGTGCGCCCAGGTGcccc > 2:5065334/1‑150 (MQ=255) tggcGGCTTTTGCGGGGGCCGGCCCGCACCCCCTGTGTTATCCCCCCCGTGATGACTGTGGGGTCTTTGGGGGGGGGGGGGGCCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGt < 1:4156041/147‑1 (MQ=255) gcggcccTTTGGGCGGCCCCGCCCCCACCCACCGGTATAACACCGCCCTGACGACTGGGGGGTCGTGGGGGGCGGGGGGGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTc < 1:2327533/145‑1 (MQ=255) ggCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGGCATc > 2:4867130/1‑150 (MQ=255) gtGCGGGCGGGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGc < 2:2540949‑M1/148‑1 (MQ=255) gtGCGGGCGGGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGc < 2:4846673‑M1/148‑1 (MQ=255) GCGGGCCCGCCCGCACCCACAGGTATATCACCGCCCTGAAGACCGTGGGGTCCTTGTGGGTGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCtt > 2:5085673‑M1/1‑150 (MQ=255) GGGCCCGCCCGCACCCCCCGGTAGCGCCCAGCCCTGCAGCCAGGGGGGTCCGTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGc > 1:2604379‑M1/1‑150 (MQ=255) GGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGc < 2:4939491‑M1/150‑1 (MQ=255) gcccgcccGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggttcaggcaatatttctctaaagggcctgcagagcagcgaaccgccccgccagcccctgctcggcaaac < 2:2750629‑M2/150‑94 (MQ=255) gcccgcccGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggttcaggcaataattctctaaagggcctgcagagcatcgaaccgccccgccagcccctgctcggcaaac < 1:530631‑M2/150‑94 (MQ=255) cccgcccgCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggcacaggcaataattctctcaagggcctgcagggcatcgaaccgccccgccagcccctgctc > 1:1763878‑M2/1‑56 (MQ=255) cccgcccgCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctc < 2:1763878‑M2/142‑87 (MQ=255) cccgcccgCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctc > 1:4505977‑M2/1‑56 (MQ=255) cccgcccgCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctc < 2:4505977‑M2/142‑87 (MQ=255) ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactg < 2:139390‑M2/150‑96 (MQ=255) ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactg < 2:1180078‑M2/150‑96 (MQ=255) ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactg < 1:5292925‑M2/150‑96 (MQ=255) CCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCcag < 2:4693471‑M1/150‑1 (MQ=255) CCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCcag < 1:4188412‑M1/150‑1 (MQ=255) CCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCcag < 1:551022‑M1/150‑1 (MQ=255) GCCCGCACCCACCGGGATATCACCGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCcagca > 2:307270‑M1/1‑150 (MQ=255) ccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctcc < 1:842117‑M2/150‑100 (MQ=255) ccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctcc < 2:4913215‑M2/150‑100 (MQ=255) CCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACaa > 2:381152‑M1/1‑94 (MQ=255) CCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACaa < 1:381152‑M1/94‑1 (MQ=255) CCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTc < 2:2158286‑M1/128‑1 (MQ=255) CCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTc > 1:2158286‑M1/1‑128 (MQ=255) cgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaagaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctcca < 2:1997229‑M2/150‑101 (MQ=255) cgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcggcaaactgctcca < 2:1659783‑M2/150‑101 (MQ=255) cACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcagggcatcgaaccgccccgccagcccctgctcg < 1:996758‑M2/135‑88 (MQ=255) aCCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAgcgggcgggcccgcgaaaaggccggcacaggcaataattctctaaagggcctgcaggg > 1:737338‑M2/1‑47 (MQ=255) ccACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGtt > 1:4113194/1‑145 (MQ=255) ccACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGtt < 2:4113194/145‑1 (MQ=255) ccACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTtgctgc < 2:3442154/150‑1 (MQ=255) acaGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGccc > 1:4314449/1‑150 (MQ=255) acaGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGccc > 2:2232727/1‑150 (MQ=255) aGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCa > 1:3449417/1‑150 (MQ=255) | AAGCTGTTGCCGGGCAAGACCCGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCA > NC_002947/2080079‑2080377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |