BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,273,179	C→G	5.8%	intergenic (+35/‑185)	PP_2002 → / → PP_t31	oxidoreductase/tRNA‑Val

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,273,179	0	C	G	5.8%	366.2 / 7.7	119	intergenic (+35/‑185)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val
Reads supporting (aligned to +/- strand): ref base C (51/56); new base G (5/2); total (56/63)
Fisher's exact test for biased strand distribution p-value = 2.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 121 total aligned reads displayed.

CGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCG  >  NC_002947/2273030‑2273327

cGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGc                                                                                                                                                        <  1:4135992/150‑1 (MQ=255)

  tGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTa                                                                                                                                                      >  1:1139451/1‑150 (MQ=255)

    gAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTaaa                                                                                                                                                    >  2:1111498/1‑150 (MQ=255)

    gAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTaaa                                                                                                                                                    >  1:1715140/1‑150 (MQ=255)

     aaGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAc                                                                                                                                                   <  2:2131544/150‑1 (MQ=255)

     aaGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAc                                                                                                                                                   >  2:3406543/1‑150 (MQ=255)

     aaGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAc                                                                                                                                                   <  1:4365078/150‑1 (MQ=255)

     aaGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTAGCGGcataaa                                                                                                                                                   >  1:636882/1‑145 (MQ=255)

     aaGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTAGCGGCTAAAc                                                                                                                                                   >  2:123488/1‑150 (MQ=255)

     aaGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCACTTCGCGGGTAAAc                                                                                                                                                   >  1:1185829/1‑150 (MQ=255)

      aGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAcc                                                                                                                                                  >  2:1578244/1‑150 (MQ=255)

        aTGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCg                                                                                                                                                <  1:178321/150‑1 (MQ=255)

         tGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGc                                                                                                                                               <  1:1554425/150‑1 (MQ=255)

         tGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGc                                                                                                                                               <  1:263046/150‑1 (MQ=255)

           tCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCCCTc                                                                                                                                             >  2:3482359/1‑150 (MQ=255)

           tCGCGGCCATGGTTCCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTGTAAACTGCGCCGGCCTCTTCGCGGCAAAACCCGCTc                                                                                                                                             >  2:1706435/1‑150 (MQ=255)

              cgGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTa                                                                                                                                          <  1:4689292/150‑1 (MQ=255)

              cgGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTa                                                                                                                                          <  1:941525/150‑1 (MQ=255)

                    tGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCCCGCCGACa‑aacg                                                                                                                                   >  1:2595200/1‑147 (MQ=255)

                    tGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTGCGCGGCTAATCCCGCGCCTACA‑A‑Cgg                                                                                                                                  >  1:2594777/1‑150 (MQ=255)

                      gTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACagtcgga                                                                                                                                  <  2:4022619/150‑7 (MQ=255)

                      gTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGtt                                                                                                                                <  2:3775967/150‑1 (MQ=255)

                        tGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTaa                                                                                                                              <  2:4194508/150‑1 (MQ=255)

                         gCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAAt                                                                                                                             <  2:3672341/150‑1 (MQ=255)

                          ccTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATg                                                                                                                            <  2:4870683/150‑1 (MQ=255)

                          ccTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGATTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGCTTAATg                                                                                                                            <  2:4870692/150‑1 (MQ=255)

                           cTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTACAACA‑A‑CGGTTAAttt                                                                                                                           >  1:2236948/1‑148 (MQ=255)

                           cTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTGCGCCGCATAACACCCGCCGAAA‑A‑CGGTGGATGt                                                                                                                           >  1:2401794/1‑150 (MQ=255)

                           cTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCACTTAGCGGCTAAACCCCCACCTAAA‑A‑ACGTTAATGt                                                                                                                           >  1:2236823/1‑150 (MQ=255)

                             ggTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTcc                                                                                                                         <  2:2109922/150‑1 (MQ=255)

                              gTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCg                                                                                                                        >  2:2162932/1‑150 (MQ=255)

                              gTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTAGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCg                                                                                                                        >  2:232324/1‑150 (MQ=255)

                               ttGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGGTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCATCGCGGCAAAAAACCCAACAACA‑A‑ACGTTAATGTACGa                                                                                                                       >  1:1008394/1‑150 (MQ=255)

                                   tGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGt                                                                                                                   >  2:3225249/1‑150 (MQ=255)

                                   tGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCACTTCGCGGCTAAACCCGCTCCTACA‑A‑CCGTTAAAGTACGACTGt                                                                                                                   >  2:2493606/1‑150 (MQ=255)

                                   tGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGAAGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGt                                                                                                                   >  2:841733/1‑150 (MQ=255)

                                    gTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTa                                                                                                                  <  2:3952101/150‑1 (MQ=255)

                                    gTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTa                                                                                                                  <  1:1994824/150‑1 (MQ=255)

                                    gTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTa                                                                                                                  <  2:689774/150‑1 (MQ=255)

                                    gTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTa                                                                                                                  <  2:2402415/150‑1 (MQ=255)

                                           cAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCgg                                                                                                           <  1:3701516/150‑1 (MQ=255)

                                            aGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCggg                                                                                                          <  2:1954213/150‑1 (MQ=255)

                                            aGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCggg                                                                                                          <  1:3078757/150‑1 (MQ=255)

                                            aGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCggg                                                                                                          <  2:4502788/150‑1 (MQ=255)

                                             ggcggcATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCACTTCGCGGCGAAAACCCCACCACAA‑A‑CCGGGAAATTCCGACTGGAGGTGCgggg                                                                                                         >  1:5165734/1‑149 (MQ=255)

                                              gcggcATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGtt                                                                                                        <  1:2767333/150‑1 (MQ=255)

                                              gcggcATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGtt                                                                                                        >  2:4642887/1‑150 (MQ=255)

                                              gcggcATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGtt                                                                                                        <  2:393503/150‑1 (MQ=255)

                                               cggcATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCGCGTCGCGGCTCAAACCCCGCCAACA‑A‑CCGGGTATGTCCGACGGTAGGCGCGGGgtt                                                                                                       >  1:1968186/1‑150 (MQ=255)

                                                  cATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTAcc                                                                                                    <  2:1139451/150‑1 (MQ=255)

                                                  cATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTAcc                                                                                                    <  1:1257043/150‑1 (MQ=255)

                                                   aTTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTAccc                                                                                                   >  2:2042974/1‑150 (MQ=255)

                                                   aTTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGAATGTAGGAGCGGGTTTAccc                                                                                                   >  2:2042980/1‑150 (MQ=255)

                                                     ttGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGT‑CGGACATTAACCG‑TTGTAGGAGCGGGTTTAGCcgc                                                                                                 <  1:4823635/150‑1 (MQ=18)

                                                     ttGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCcgc                                                                                                 <  2:1783691/150‑1 (MQ=255)

                                                     ttGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCcgc                                                                                                 <  1:3225249/150‑1 (MQ=255)

                                                        tCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGaa                                                                                              <  1:2278150/150‑1 (MQ=255)

                                                        tCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAACCGCACCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGaa                                                                                              >  1:2240703/1‑150 (MQ=255)

                                                           ccGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCGTAGCGGCAAAAACCCCGCCGACA‑ACCGGTTAA‑GTACGGCGGTAGGATCGGGGTTTGCCGCGCagcg                                                                                           >  1:4551554/1‑148 (MQ=255)

                                                             ggCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGc                                                                                         <  1:4863173/150‑1 (MQ=255)

                                                               ccAGGTGTTTGGGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCATACA‑A‑CGGTTAATGTCCTACTGTAGGAGCGGGTTTACCCGCTAAGAGGCCg                                                                                       <  2:136301/150‑1 (MQ=39)

                                                                cAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                                      >  2:4997593/1‑150 (MQ=255)

                                                                     gTTTGTGGTCGATGGCGGCATGACCCGCAATATGATATATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑C‑GGGTTAATGTCCGACTTTTGTAGGGGGTTTACCCGCTAAGAGGCCGGCACAg                                                                                 <  2:4191658/150‑1 (MQ=255)

                                                                         gtgGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAACCCCACCAACA‑A‑CCGTTAATGTCCGTCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACACGCaa                                                                             >  2:2734922/1‑150 (MQ=38)

                                                                          tgGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTTTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTAAA‑A‑CGGTTAAGGTCCGACTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAat                                                                            <  2:1018926/150‑1 (MQ=255)

                                                                             tCGAGGGCGGCATCACCCCCAATATTATATATACCTGACAACCTTTTTTAAACTGCGCCGCCCTCTTCGCGGATAAACCCGCTCCTACA‑A‑CGTTTAATGTCCGACTGTAGGAGCGGTTTTACCCGCGAAGAGGCCGGCACAGGCAatcac                                                                         <  1:3115198/150‑1 (MQ=37)

                                                                               gATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACGGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGCCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAatcacat                                                                       <  1:4014392/150‑1 (MQ=255)

                                                                               gATGGCGGCATGACCCGAAATATTATCTATACCTTAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGATAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGTTTTACCCGCGAAGAGGCCGGCACAGGCAatcacat                                                                       <  2:3647737/150‑1 (MQ=38)

                                                                                      gcATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAACCCCGCCGACA‑A‑CGGGTAATTTGCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTg                                                                >  1:2671732/1‑150 (MQ=38)

                                                                                       cATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGc                                                               <  2:3403303/150‑1 (MQ=255)

                                                                                          gACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAACCCCTCCAAAA‑A‑ACGGTAATTTGCGGCTGTAGGATCGGGGTTAACCCCGCAGAGGCCGGCCCAGGCAAAAACAACACGTTTCCtt                                                            >  1:4219398/1‑150 (MQ=255)

                                                                                            cccGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCtttt                                                          <  2:791777/150‑1 (MQ=255)

                                                                                             ccGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAACCCCTCCTACA‑A‑CGGTTAATTTCCGACGGTAGGAGCGGGGTTACCCCCGAAGAGGCCGGCACAGGCAAACACATCAAGTTGCCttttt                                                         >  2:2518370/1‑150 (MQ=38)

                                                                                              cGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGTGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTg                                                        <  2:4518105/150‑1 (MQ=255)

                                                                                                     tgatCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGaaaaaaa                                                 <  2:5062846/150‑1 (MQ=255)

                                                                                                     tgatCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTACGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGTTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGaaaaaaa                                                 <  2:3007628/150‑1 (MQ=255)

                                                                                                        tCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACCTTGCCTTTTTGAAAAAAAtac                                              >  2:2777019/1‑148 (MQ=255)

                                                                                                        tCTATACCTGAGCACCTTGTTAAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGGGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTc                                              <  2:1589792/150‑1 (MQ=255)

                                                                                                           ataCCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAAt                                           >  2:4993988/1‑150 (MQ=255)

                                                                                                               cTGAGCACCTTGTTGAAACTGCGCCGGCCTCTTCGCGGCTAAACCCCCGCCTACA‑A‑CCGGTAATGTCCGACGGGAGGAGCGGGTTTACCCGCCAAGAGGCCGGCACAGGCAATCACATCACGTTGCCGTTTTGAAAAAAAGTCAAAgggg                                       >  2:3510816/1‑150 (MQ=255)

                                                                                                                    cACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGATAAACCCGCTCCTACA‑A‑CGTTTAATGTCCGACTTTAGGAGCGGGTTTACCCGCGAAGTGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTAtt                                  <  1:3946951/150‑1 (MQ=255)

                                                                                                                       tttttttAACCTGCGCCGGCCTCTTCGCGGAAAAACCCGCTCCAACA‑A‑CGTTTAATGTCCTACTGTTGGTGCGTTTTTACCCGCGAAGCGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGAc                               <  1:1111498/146‑1 (MQ=255)

                                                                                                                         tGTTTAAACTGCGCCGGCCTCTTCGCGTCTAAACCCGATCCTACA‑A‑CGTTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACtt                             <  2:1220639/150‑1 (MQ=255)

                                                                                                                                aCTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGCAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGAATTAGCTTCg                      >  2:4864181/1‑150 (MQ=255)

                                                                                                                                aCTGCGCCGGCCTCTTCGCGGCTAAAACCCCTCCTACA‑A‑CGGTTAAATTCCGACTGTAGGAGCGGGGTTACCCCCGAAGAGGCCGGCACAGGCAATAACAACACCTTGCCTTTTTGAAAAAAATTAAAAGGGGCGATTGACATAGCttag                      >  2:4694092/1‑148 (MQ=25)

                                                                                                                                      ctggCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGa                                                                                                                       >  1:5011684/3‑47 (MQ=255)

                                                                                                                                      ctggCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGa                                                                                                                       <  2:5011684/45‑1 (MQ=255)

                                                                                                                                      ccGGCCTCTTCGCGGCTAACCCCGCTCCTACC‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCt                <  2:5146392/150‑1 (MQ=255)

                                                                                                                                       cGGCCTCTTCGCGGGTAAACCCGCACCTACAGT‑CGGACATTAACCG‑TTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCCCCTg               >  2:2205669/1‑150 (MQ=17)

                                                                                                                                        ggCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAACATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGc              >  2:4038575/1‑150 (MQ=255)

                                                                                                                                             ctTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTaaa         >  1:874637/1‑150 (MQ=255)

                                                                                                                                              ttCGCGGGTAAACCCGCTCCTACAGT‑CGGACATTAACCG‑TTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAAt        >  2:2243885/1‑150 (MQ=18)

                                                                                                                                              ttCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCTATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAAt        >  2:2878063/1‑150 (MQ=255)

                                                                                                                                              ttCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAAt        >  2:4782804/1‑150 (MQ=255)

                                                                                                                                              ttCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAAt        >  2:4604250/1‑150 (MQ=255)

                                                                                                                                              ttCGCGGCAAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGTTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAAt        <  2:636882/150‑1 (MQ=255)

                                                                                                                                                  cgGGTAAACCCGCTCCTACAGT‑CGGACATTAACCG‑TTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTcg    >  2:4271267/1‑150 (MQ=18)

                                                                                                                                                   ggCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGGGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTcgc   <  2:2236823/150‑1 (MQ=255)

                                                                                                                                                   ggCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTcgc   <  2:2236948/150‑1 (MQ=255)

                                                                                                                                                    gCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAAGTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTcgcg  >  2:3096887/1‑150 (MQ=255)

CGTGGAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑A‑CGGTTAATGTCCGACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATCACATCACGTTGCCTTTTTGAAAAAAATTCAATGGGGCTATTGACTTAGCTTCGCCACCTGCGTAAATTTCGCG  >  NC_002947/2273030‑2273327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`