| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,458,750 | G→A | 6.5% | intergenic (+36/‑145) | gapB → / → PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,458,750 | 0 | G | A | 6.5% | 467.1 / 13.4 | 152 | intergenic (+36/‑145) | gapB/PP_2150 | glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein |
| Reads supporting (aligned to +/- strand): ref base G (52/90); new base A (4/6); total (56/96) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 157 total aligned reads displayed.
GACAACCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGT > NC_002947/2458601‑2458896 | gACAACCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAATACGGGAACCTTCg > 1:5208337/1‑150 (MQ=255) aCAACCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCgg < 2:4533945/150‑1 (MQ=255) aaCCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGt > 1:4914262/1‑150 (MQ=255) aaCCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGt > 2:2766017/1‑150 (MQ=255) aaCCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGt > 2:2766128/1‑150 (MQ=255) gcgTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCgg > 1:2858573/1‑144 (MQ=255) ttgttCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑tt < 2:5364068/150‑1 (MQ=255) ttgttCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACAGGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCCGAAGGTTCCCG‑tt < 2:5095342/150‑1 (MQ=255) tgttCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑ttt < 2:1298311/150‑1 (MQ=255) tgttCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑ttt < 1:3486963/150‑1 (MQ=255) tcagTACGTCTGCTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGTCCTGGCTGGTGTGCACCCGCCAGCGTTTCCACGCTGATTCGGTTGTAAGGCAATGTAAAAACGGGAAACTTCGGGTTCCCG‑tttttt < 2:1399368/147‑1 (MQ=255) cTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑ttttttt < 2:4366538/150‑1 (MQ=255) tGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCCGAAGGTTCCCG‑ttttttca < 2:2971760/150‑3 (MQ=255) tGTACGTATGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTTTAAGGCAATTAAAAAACGGGAACCTTCGGGTTCCCG‑tttttttt < 2:5423763/150‑1 (MQ=255) ccGTCGGGTACGACAACGAAGTCGGTTATCGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAACAAACGGGAACCTTCGGGTTCCCG‑tttttttttta < 2:2406958/149‑3 (MQ=255) cGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTAtt > 2:1948037/1‑150 (MQ=255) cGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTAtt > 2:2062415/1‑150 (MQ=255) gTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTc > 2:481371/1‑150 (MQ=255) ggTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGaa < 2:3424830/150‑1 (MQ=255) ggTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGaa < 2:4003618/150‑1 (MQ=255) ggTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGaa < 2:4003580/150‑1 (MQ=255) ggTACGACAACGAATTCGGTTAGAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGaa < 1:5093856/150‑1 (MQ=255) tACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAtg > 2:1200282/1‑150 (MQ=255) cGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAtgtg > 2:3208253/1‑150 (MQ=255) gACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAAtgtg < 2:3879528/150‑1 (MQ=255) gACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAtgtgt < 1:4372393/150‑1 (MQ=255) gACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAtgtgt < 1:5105213/150‑1 (MQ=255) gACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAtgtgt < 2:201176/150‑1 (MQ=255) gAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTTATTCTGAATGTGtgttgt < 1:2373816/150‑1 (MQ=255) gAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTc < 1:3333977/150‑1 (MQ=255) gAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTc > 2:3275577/1‑150 (MQ=255) aTTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCCGAAGGTTCCCG‑ttttttcatt > 2:1344249/1‑126 (MQ=38) aTTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCCGAAGGTTCCCG‑ttttttcatt < 1:1344249/130‑5 (MQ=38) ttCTGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGACTGCGTTTCCACGCTGATTCTCTTGTAAGGCCATGAACAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGt < 1:3065565/150‑1 (MQ=255) ttCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGt < 2:205578/150‑1 (MQ=255) ggTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGcc > 1:3722022/1‑150 (MQ=255) gTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCg < 1:2133852/150‑1 (MQ=255) ttATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCgg < 2:1288706/150‑1 (MQ=255) ccAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAGCCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTcgc < 2:1981730/150‑1 (MQ=255) ccAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTcgc < 1:5143679/150‑1 (MQ=255) ccAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTcgc < 2:1535438/150‑1 (MQ=255) ccAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTAATCTGAATGTGTGTTGTCAGTGCCGGCCCTTTcgc > 2:210788/1‑150 (MQ=255) cAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGtgttgt > 2:3901946/1‑131 (MQ=255) cAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGtgttgt < 1:3901946/131‑1 (MQ=255) aGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCgg < 1:1244070/150‑1 (MQ=255) aGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCgg > 1:5311929/1‑150 (MQ=255) gtggtTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGt < 2:2597578/150‑1 (MQ=255) tgtgATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTcgc < 2:4334859/138‑1 (MQ=255) tgtgATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTcgc > 1:4334859/1‑138 (MQ=255) tgtgATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGc < 1:5181433/150‑1 (MQ=255) tgtgAGGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGc < 2:3569763/150‑1 (MQ=255) tgATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTc < 2:1051859/150‑1 (MQ=255) tgATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTc > 1:2051310/1‑150 (MQ=255) tGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCggg < 2:3515840/136‑1 (MQ=255) aagaattGGCTGTTTTGAACCCGCCAGCGTTTCAACGCTTATTCGATTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAg < 1:3243945/144‑1 (MQ=38) gACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGACCCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAggc > 1:2560636/1‑149 (MQ=255) gACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAGGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTCCAGGa < 1:1919653/150‑1 (MQ=255) aTGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCCCTCCTACAGGATTa > 2:1438522/1‑150 (MQ=255) gCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGACTGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCGTCAGGCTTATCg > 1:4462917/1‑150 (MQ=255) gtgtGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAtgt < 1:2104344/93‑1 (MQ=255) gtgtGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAtgt > 2:2104344/1‑93 (MQ=255) gtgAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTc > 2:1765781/1‑130 (MQ=255) gtgAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACa < 1:2073732/135‑1 (MQ=255) gtgAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGccc < 1:4227878/150‑1 (MQ=255) gtgAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGccc < 1:687446/150‑1 (MQ=255) gtgAACCCGCCAGCGTGTCCACGCTGAGTCGCTTGTAAGGCACTGAACAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGccc < 2:4171072/150‑1 (MQ=255) tgAACCCGCCAGCGTTTCCACGCTGATACGCGGGTCAGGCAAGGAAAAAACGGGCACCGTCGGGTGCCCG‑TTTTGTTGTATTCTGAATGTGTGGTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCGACAGGATGAGCGCTGcccc > 2:4071235/1‑150 (MQ=25) gAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAAACCGCTCCTACAGGATTATCGCTGCCCCt > 1:872789/1‑150 (MQ=255) aCCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGt < 2:1927083/150‑1 (MQ=255) aCCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGt < 1:1227987/150‑1 (MQ=255) aCCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGt < 2:731539/150‑1 (MQ=255) ccGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATGGCGGCCCCTGTAg > 2:2315886/1‑150 (MQ=255) cAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGc < 1:1301293/150‑1 (MQ=255) aGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGGAAACCCGCTCCTACAGGGTTATCGCTGCCCCGGTAGGAGCg > 1:3131750/1‑150 (MQ=255) gCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCgg < 2:964449/150‑1 (MQ=255) cGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCggg < 1:3126330/150‑1 (MQ=255) cGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCggg < 1:523314/150‑1 (MQ=255) tttCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑‑TTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCACCTACAGGATTATCGCTGCCCCGGTAGGAGCGGGttt > 2:4677466/1‑150 (MQ=255) ccACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTAc < 1:2499010/150‑1 (MQ=255) aCGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTTAAACCCCACCAAAAAGATAAAACCACCCCCCGGAGGAGCGGGGTTAccc > 1:682885/1‑150 (MQ=255) gCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCcgc < 1:3081223/150‑1 (MQ=255) gCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCCGAAGGTTCCCG‑ttt < 1:1844089/52‑1 (MQ=18) gATGCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCTACCGTATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGaa < 2:307499/150‑1 (MQ=255) aTTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCg > 2:4915940/1‑80 (MQ=255) ttCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAaga < 2:3171664/150‑1 (MQ=255) gCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCg > 1:1808020/1‑131 (MQ=255) gCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCg < 2:1808020/131‑1 (MQ=255) atggCAATGAAAAAAGGGGAACCTGCGGGTCCCCG‑TTTTTTTTTATTCTGAAGGTGTGTGGGCTGTGCCGGCCCTTGGGGGGGTAAACCCGCTCCTACCGGATTATCGCGGCCCCTGTAGGAGGGGGTTTACCCGCGAAGAGGCCAGCAc < 1:5419312/148‑1 (MQ=255) aaGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGc > 2:1844179/1‑112 (MQ=255) aaGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAAGGTGTGTGGTCAGTGCCGGCCCTGTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCAc < 2:3459272/150‑1 (MQ=255) aaaCGGGAACCTTCGGGTTCCCG‑TTTTTTTTTTTTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGTAGCGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCgaga < 1:4946527/150‑1 (MQ=255) aaaCGGGAACCCGAAGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTcgcg < 1:250848/69‑1 (MQ=25) aaaCGGGAACCCGAAGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTcgcg > 2:250848/1‑69 (MQ=25) aaaCGGGAACCCGAAGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAATCCCGGTGCTAGAGGATTTTGGGTGCCGCTGTAGGATCGGGTTTTGCCGCGAGTAGGGCAGGACCGGCAACCgaga > 2:4174062/1‑150 (MQ=255) aaCGGGAACCTTCGGGTTCCCG‑TTTTTTTTTTTTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGTATTATCGCGGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGaa < 2:747428/150‑1 (MQ=255) aCGGGACCCGCCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTGGACAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGTATTATCGCGGCCCCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGaaa < 2:2082747/150‑1 (MQ=38) aCGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCAGCGAAGAGGCCAGCACCGGCAACCGAGaaa < 2:2082813/150‑1 (MQ=255) aCGGGAACCTTCGGGTGCCCG‑TTTTTTTTTATTCTGAATGGGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGaaa < 2:2491765/150‑1 (MQ=255) aaCCTTCGGGTTCCCG‑TTTTTTTTTATTCTGATTGTGTGTTGTCTGTGCGGGCCCTTTCGCGGGTAAACCCGCTCCTACCGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTa < 2:3722022/150‑1 (MQ=255) ttCGTGTTCCTT‑TTTTTTTTTTTGCTGAATGTGTGGTGTCAGGGCCGCCCCTTGCGCGGTAAAACCCGCTCCAACCGTATTCGGGCGGCCCCTGTTGGAGGGGTTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACtgt < 1:913359/150‑1 (MQ=255) | GACAACCGCGTTGTTCTGTACGTCTGGTACGACAACGAATTCGGTTATAGCTGCCAGGTGGTTCGTGTGATGGAAGACATGGCTGGTGTGAACCCGCCAGCGTTTCCACGCTGATTCGCTTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCG‑TTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGT > NC_002947/2458601‑2458896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |