| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,943,672 | A→G | 5.0% | intergenic (+27/+19) | PP_2574 → / ← PP_2575 | LysR family transcriptional regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,943,672 | 0 | A | G | 5.0% | 641.8 / 13.4 | 198 | intergenic (+27/+19) | PP_2574/PP_2575 | LysR family transcriptional regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (92/96); new base G (4/6); total (96/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.71e-01 | |||||||||||
Only 100 of 202 total aligned reads displayed.
ATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTGGCGCATGCCACCGAC > NC_002947/2943523‑2943819 | aTTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTa < 2:891361/150‑1 (MQ=255) ttGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAg > 1:1549815/1‑150 (MQ=255) tGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGc < 2:2225623/150‑1 (MQ=255) gCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCTACTCCTGCCGGGGTGGCa < 2:5043732/150‑1 (MQ=255) ccGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGCAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAt < 2:2534424/150‑1 (MQ=255) cGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCTACTCCTGCCGGGGTGGCAtg < 2:1792884/150‑1 (MQ=255) cGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCTACTCCTGCCGGGGTGGCAtggcgtg < 1:3586420/150‑1 (MQ=39) gTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAtggcgtggc < 1:3943496/150‑1 (MQ=255) gTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAtggcgtggc > 2:2144575/1‑150 (MQ=255) gTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAtggcgtggc < 2:3604211/150‑1 (MQ=255) ggCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGa > 1:5006052/1‑150 (MQ=255) gcgcTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGAt > 2:5228920/1‑150 (MQ=255) cgcTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGAtt < 2:2800561/150‑1 (MQ=255) gcTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTg > 1:980088/1‑150 (MQ=255) tCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCa < 1:4078479/150‑1 (MQ=255) tCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCa < 1:3193752/150‑1 (MQ=255) cGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAg < 1:2203958/150‑1 (MQ=255) ggggCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAgg > 2:3617234/1‑150 (MQ=255) ggggCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAgg > 2:3229132/1‑150 (MQ=255) ggggCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAgg < 2:2984991/150‑1 (MQ=255) ggggCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAgg < 1:4336863/150‑1 (MQ=255) gggCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAggg < 1:4791798/150‑1 (MQ=255) gggCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAggg > 2:1875509/1‑150 (MQ=255) tggctgCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTg > 2:4277482/1‑150 (MQ=255) ggctgCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGa > 2:272312/1‑150 (MQ=255) ctgCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGAcc < 2:710114/150‑1 (MQ=255) ctgCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGAcc < 1:4413351/150‑1 (MQ=255) ctgCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGAcc > 1:3132123/1‑150 (MQ=255) gcggcgTGGTTGAAGCGAGTCCTGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTg < 1:2768484/150‑1 (MQ=255) gcgTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTa > 2:1203852/1‑150 (MQ=255) tGGTTTTAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGGTGGCTAAGTTCCTGAAGTGAGCACGCCTTGCCAGCCCGGCATGAGTAGCATGGCGGGGCGATTGCTCAGGGGTTGACCTGGTAGcc < 1:4177228/150‑1 (MQ=255) gTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCcgc > 2:2061768/1‑150 (MQ=255) ttGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCcgcg > 2:1110209/1‑150 (MQ=255) ttGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCcgcg > 1:3548959/1‑150 (MQ=255) ttGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCcgcg > 1:3634640/1‑150 (MQ=255) tGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCgcgc < 2:1268744/150‑1 (MQ=255) gAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGcc < 2:4469952/150‑1 (MQ=255) gAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGcc > 1:535729/1‑150 (MQ=255) aGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTa > 2:5013031/1‑104 (MQ=255) gCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCtt > 1:3868365/1‑150 (MQ=255) cGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTg < 2:4599668/150‑1 (MQ=255) aGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCa < 2:1496723/150‑1 (MQ=255) gTCCAGCTGACCAACCCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAg < 1:1502425/150‑1 (MQ=255) gTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAg < 2:2271802/150‑1 (MQ=255) cAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCa > 1:1061302/1‑150 (MQ=255) aGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCaa < 1:1830423/150‑1 (MQ=255) cTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAACCGCGCCCTTGCAGGCAAcc > 2:5329224/1‑150 (MQ=255) aCCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAggg > 1:302677/1‑114 (MQ=255) aCCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCt < 2:5257450/150‑1 (MQ=255) aCCAAACCGGCGCAGTTGTTCGTGGAGTTTGGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCt < 1:26640/150‑1 (MQ=255) cAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGt > 2:2100834/1‑150 (MQ=255) aGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTAGCGATTGCTCa > 2:3894041/1‑98 (MQ=255) ttgttCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATg < 1:5322194/150‑1 (MQ=255) tCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGcc < 1:2024229/150‑1 (MQ=255) gTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCta < 1:5213264/102‑2 (MQ=255) gTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCta > 2:5213264/1‑101 (MQ=255) tGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTgg > 2:3355767/1‑150 (MQ=255) gAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGt > 2:3591814/1‑150 (MQ=255) aGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGtt < 2:2994199/150‑1 (MQ=255) gTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGttt < 2:1355860/150‑1 (MQ=255) ttttGTCGTGAAGAGCTGGCGAAGGTCCTGAAGTGAGCACGCCATGCCCCCCCGTCTTGAGTAGCATGGCGTGGGGATTGCTGTGGGGTTGAGCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGGACTGGCATTGGCCTGGGtttt < 1:5426572/150‑1 (MQ=255) ttttGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGtttt < 1:2951724/150‑1 (MQ=255) tttGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTg < 1:3274021/150‑1 (MQ=255) tttGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTg < 1:3259472/150‑1 (MQ=255) gTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGcc > 2:2626718/1‑150 (MQ=255) gggAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCt > 2:3094723/1‑136 (MQ=255) gggAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCg > 2:1584506/1‑150 (MQ=255) ggAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGt > 1:4821903/1‑150 (MQ=255) gAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAggg > 1:5149161/1‑78 (MQ=255) gAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTc < 1:1049098/150‑1 (MQ=255) aaGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTcc < 1:3474322/150‑1 (MQ=255) agagCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCt < 1:4734592/150‑1 (MQ=255) cTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTc > 2:580310/1‑150 (MQ=255) gAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgcc > 1:4013746/1‑150 (MQ=255) aGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccgg < 2:1866194/150‑1 (MQ=255) aGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccgg < 2:4730453/150‑1 (MQ=255) ttCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtc < 1:2440162/150‑1 (MQ=255) ttCCTAAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtc > 1:3492056/1‑150 (MQ=255) ccTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcct > 1:4968893/1‑150 (MQ=255) cTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGTCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctg > 1:3640024/1‑150 (MQ=255) cTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctg < 1:1172777/150‑1 (MQ=255) cTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctg > 1:138409/1‑150 (MQ=255) gAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggc > 1:2888776/1‑150 (MQ=255) tGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggcgccg < 2:3492056/150‑1 (MQ=255) tGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggcgccg < 2:5091683/150‑1 (MQ=255) aCGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggcgccggtcct > 1:3879839/1‑150 (MQ=255) gCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGa > 1:2640422/1‑150 (MQ=255) cATGCTACTCCTGCCGGGGTGGCATGGCGT‑GCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGc > 1:299366/1‑110 (MQ=37) aTGCTACTCCTGCCGGGGTGGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGc > 1:177527/1‑150 (MQ=255) tGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCt > 2:3362609/1‑150 (MQ=255) cACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTTCTGACGCTGgc > 1:2219013/1‑150 (MQ=255) cACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTGgc < 1:2331119/150‑1 (MQ=255) aCCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTGgcg > 1:831716/1‑150 (MQ=255) ccccGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTGgcgc < 1:2618658/150‑1 (MQ=255) cccGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTGGCGCa > 2:5073821/1‑150 (MQ=255) cGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTGGCGCATg < 2:4918371/150‑1 (MQ=255) ggCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTGGCGCATGc < 2:4036370/150‑1 (MQ=255) gTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTGGCGCATGCCaccgac > 1:2028729/1‑150 (MQ=255) gTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTGGCGCATGCCaccgac < 2:2453992/150‑1 (MQ=255) tAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTg < 2:5413680/72‑1 (MQ=255) | ATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTGGCGCATGCCACCGAC > NC_002947/2943523‑2943819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |