| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,374,783 | C→G | 9.1% | intergenic (+268/+24) | PP_2970 → / ← PP_2971 | hypothetical protein/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,374,783 | 0 | C | G | 9.1% | 335.6 / 9.9 | 117 | intergenic (+268/+24) | PP_2970/PP_2971 | hypothetical protein/transposase |
| Reads supporting (aligned to +/- strand): ref base C (60/45); new base G (2/10); total (62/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.22e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 124 total aligned reads displayed.
GTTGTTTATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTGCCGCCCA > NC_002947/3374634‑3374931 | ttgttTATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAg‑cg > 2:926312/1‑150 (MQ=255) ttgttTATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAg‑cg > 1:2266474/1‑150 (MQ=255) ttgttTATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAg‑cg > 1:2175092/1‑150 (MQ=255) tgttTATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAg‑cgg > 1:3786626/1‑150 (MQ=255) tttATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAg‑cggcg > 1:727741/1‑150 (MQ=255) tGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTc < 1:5300416/150‑1 (MQ=255) tGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTc < 1:5300466/150‑1 (MQ=255) gggCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCg > 2:4814447/1‑150 (MQ=255) gggCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCg < 2:2228700/150‑1 (MQ=255) gggCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCG‑CCGCTGCAGAGGGCGATTCg < 2:3737994/150‑1 (MQ=255) gggCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGGTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCg < 2:3978933/150‑1 (MQ=255) gCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGc > 1:2749079/1‑150 (MQ=255) cACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCG‑CCGCTGCAGAGGGCGATTCggaa < 1:4305057/150‑3 (MQ=255) aCCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGccc > 1:5334879/1‑150 (MQ=255) tCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACt > 2:657279/1‑150 (MQ=255) tCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACt > 2:2740/1‑150 (MQ=255) tCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACt > 1:4018992/1‑150 (MQ=255) tCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACt > 2:3648082/1‑150 (MQ=255) tCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACt > 2:4832675/1‑150 (MQ=255) tCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGAGTCGGCCCACt > 2:4251134/1‑150 (MQ=255) aTAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCgg > 2:1692760/1‑150 (MQ=255) cgcgAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGt > 2:3101114/1‑150 (MQ=255) cgcgAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACAGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGt > 1:3392519/1‑150 (MQ=255) ttttCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAgg > 2:3216642/1‑150 (MQ=255) ttCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGcc > 1:2660864/1‑150 (MQ=255) aGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTg > 1:5208968/1‑150 (MQ=255) tCCGACCGCCAAATGATGGCCATTATCGAATTCGGTTCGTTTTCTGCGGCGAATCACCGCTTTCTGGGGGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTccc < 2:815796/150‑1 (MQ=255) tCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTccc > 2:4717613/1‑150 (MQ=255) tCCCACCGCCAAATGTTGGCCATTATCTAATTCGGTTCGTTTTGGGGGGCGAATCACGGCTTTCTGGGCGGTGTCGCCCGTTTTTTCTTCCGAAGCGCCCTCTGCAG‑CGGCGATTCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTccc < 2:588293/150‑1 (MQ=255) cGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGc > 2:3901685/1‑150 (MQ=255) ccGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGc < 1:4151891/114‑1 (MQ=255) ccGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGc > 2:4151891/1‑114 (MQ=255) gCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCt > 2:258474/1‑150 (MQ=255) ccAAATGCTGGCCTTGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGGTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCCG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTg < 2:1645557/150‑1 (MQ=255) attgttgGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAACCACCGCTTTCGGGGGGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCCG‑CGGCGATTGGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGaa < 2:4606921/145‑1 (MQ=255) aaTGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGaa < 2:2175092/150‑1 (MQ=255) ttgGCCATTATCTATTTCGGTTGGATTTCGGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCTTTTTTCTTCCGAATCGCCCTCTGCTG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTac < 2:2808017/149‑1 (MQ=255) ggCCTTGATCGATTTGGGTTGTATTTCTGCGGCGAAGCACCGGTTTGGGGGGGGTGTCGCCCCGTTTTTCTTCCGACTCGCCCTCTGCCG‑GGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTacac < 2:2444039/150‑1 (MQ=255) cATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAg > 2:4977799/1‑150 (MQ=255) aTGATCGAATTGGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCTCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCTATTAGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGc > 2:1850442/1‑150 (MQ=255) aTGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGc > 2:209223/1‑150 (MQ=255) aTCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGc > 1:5305503/1‑150 (MQ=255) cGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCtt > 1:4894939/1‑150 (MQ=255) aaTTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCa > 1:1343347/1‑150 (MQ=255) aTTGGGTTCTTTTTCGGCGGCGAACCACGGCTTTGTGGGGGGTGCCGCCCCTTTTTTCTCCCGAAGCCCCCCCGGCCG‑GGGCTCTGCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCaa < 1:2066530/150‑1 (MQ=255) aTTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGTGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGTTTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCaa < 2:3068710/150‑1 (MQ=255) ttgggTTCGTTTTCTGCGGCGAATCACCGCTTGCTGGGGGGTGTCGCCCCTTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGTTTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAg < 1:2177344/147‑1 (MQ=255) cGGTTCGAGTTCTGCGGCGAATCCCCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTGCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGtt < 2:4949656/150‑1 (MQ=255) ggTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTg > 2:2367136/1‑150 (MQ=255) gttctttttGTGGGGCTAATCCCCGATTTCGGGGGGGTGGCGCCCGTTTTTACTCCCCCACCGCCCTCTGCCG‑CGGCTTTGCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGt < 1:312256/144‑1 (MQ=255) gTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTGCAAGATGt > 1:3739865/1‑150 (MQ=255) ttctttttCTGCGGCGAAACACCGGTTTGGGGGGGGTGGCGCCCGTTTTTCCTTCCCACGCGCCCTCGGCCG‑CGGCTATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTa < 1:3809753/145‑1 (MQ=255) ttCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTa > 1:730823/1‑150 (MQ=255) ttCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTa > 2:2218021/1‑150 (MQ=255) ttCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTACGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTa < 2:423728/150‑1 (MQ=255) tCGATTACTGCGCCTAATCACCGCTTTCTGGGCGGTGTCCCCCCGTTTTACTACCCAATCCCCCCCTGCAG‑CGGCTATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAg < 2:2604928/150‑1 (MQ=255) tGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGgccgc > 2:2854441/1‑150 (MQ=255) tGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCACGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGgccgc > 2:2854432/1‑150 (MQ=255) ggggctAATCCCCGTTTTGTGGGGGGTGGCGCCCGTTTTTTCTCCCTAACCGCCCGCGGCCG‑GGGCGTTTCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGgccgcc < 1:1033168/148‑1 (MQ=255) cggctAATCACGGCTTTGTGGGGGGTGTCGCCCCGTTTTTCTACCGAATCGCCCTCTGCCG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCca < 1:816308/150‑1 (MQ=255) gAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATACGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCcatcat > 1:1163435/1‑150 (MQ=255) actCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCCG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCatcatc < 2:3792975/148‑1 (MQ=255) aaTCCCCGCTTTCGGGGGGGGGTCGCCCCTTTTTTCTTCCGAATCCCCCTCTGCCG‑GGGCTTTTGGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCatcatc < 1:4414885/150‑1 (MQ=255) aaTCACGTCTTTGGGGGCGGTGCCGCCCCTTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCTATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCatcatc < 2:35959/150‑1 (MQ=255) aCCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtca > 2:2069228/1‑150 (MQ=255) aCCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtca > 1:3446675/1‑150 (MQ=255) aCCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCCTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtca > 2:4259155/1‑150 (MQ=255) ccGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtcat > 1:2906105/1‑150 (MQ=255) ccGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtcat > 1:4750816/1‑150 (MQ=255) cGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtcatc > 2:1825276/1‑150 (MQ=255) cGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtcatc > 2:182318/1‑150 (MQ=255) cGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtcatc > 1:4891005/1‑150 (MQ=255) cGCTTTCGGGGCGGTGTCGCCCCGTTTTTCTCCCGAACCGCCCTCTGCAG‑CGGCGATGCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtcatc < 2:202501/150‑1 (MQ=255) gCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCAtcatcgtcatcg > 1:77527/1‑150 (MQ=255) gtttGTGGGGGGGGGCGCCCCGTTTTTCTGCCCAACCGCCCCCGGCCG‑CGGCGATTCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGc < 1:2950590/149‑1 (MQ=255) tCTGGGGGGTGTCGCCCGTTTTTTCTTCCGAATCGCGCTGTGCTG‑CGGCGATTGGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGTAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCaaa < 2:3392519/150‑1 (MQ=255) tGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCG‑CCGCTGCAGAGGGCGATTCggaa > 1:3323692/1‑54 (MQ=14) tGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCG‑CCGCTGCAGAGGGCGATTCggaa < 2:3323692/56‑3 (MQ=14) ggCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTc > 1:266349/1‑150 (MQ=255) gggTGTCGCCCCTTTTTTCTTCCGAATCGCCCTCGGCTG‑GGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTcgc < 2:77527/149‑1 (MQ=255) tCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGcc > 1:1683414/1‑150 (MQ=255) tCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGcc > 1:1683336/1‑150 (MQ=255) gCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGcccc > 1:1292768/1‑150 (MQ=255) ccGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGt > 1:1275548/1‑150 (MQ=255) gttttttCTTCCTACTCGCCCTGTGCTG‑CGGGGATTGGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTc < 1:4814447/148‑1 (MQ=255) ttttCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGa > 1:3917224/1‑150 (MQ=255) tttCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGAt < 2:2749079/150‑1 (MQ=255) ttcCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTa < 2:3786626/150‑1 (MQ=255) gAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGa < 2:5289479/150‑1 (MQ=255) cGCCCTGGGCTG‑CGGCGTGGCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCaa < 1:2832/150‑1 (MQ=255) gCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAAc > 2:1436577/1‑150 (MQ=255) ccccTCTGCAC‑CGGCTATACGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAACTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAAc < 1:398591/149‑1 (MQ=255) ccTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACtt < 2:4894939/150‑1 (MQ=255) ctctGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTg < 1:3101114/150‑1 (MQ=255) tctGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTgc < 2:2660864/150‑1 (MQ=255) ctGCCG‑CGGCTATGCGCCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTgcc < 1:926312/150‑1 (MQ=255) tGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACt < 1:1790824/145‑1 (MQ=255) tGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTgccg > 2:3717930/1‑150 (MQ=255) cAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGa < 2:5425285/128‑1 (MQ=255) g‑cggcgATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTGCCGCCCa > 1:1729377/1‑150 (MQ=255) | GTTGTTTATGGGCACCTCGAATAACGCGAGGTTTTCAGTGAATCCGACCGCCAAATGATGGCCATGATCGAATTCGGTTCGATTTCTGCGGCGAATCACCGCTTTCTGGGCGGTGTCGCCCCGTTTTTCTTCCGAATCGCCCTCTGCAG‑CGGCGATTCGGCCCACTCCGGGCGTCAGAAGGCCTTGATTCCCGCCTTCTGGAAGTACACCAGCCGCTTCAAGTTGTAGCAGGCCGCCATCATCGTCATCGCAAAGTTCGCGCGCCCCTGTCCGATGGTACGGATCAACTTGCCGCCCA > NC_002947/3374634‑3374931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |