| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,948,429 | C→T | 6.9% | R529H (CGT→CAT) ‡ | PP_3483 ← | type II secretion system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,948,429 | 0 | C | T | 6.9% | 567.3 / 21.9 | 187 | R529H (CGT→CAT) ‡ | PP_3483 | type II secretion system protein |
| Reads supporting (aligned to +/- strand): ref base C (83/91); new base T (4/9); total (87/100) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
Only 100 of 188 total aligned reads displayed.
GGGCCGAGGCTCGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTGGGCCAGTAC > NC_002947/3948280‑3948577 | gCCGAGGCTCGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACgg < 1:4793337/150‑1 (MQ=255) cGAGGCTCGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCa > 2:5327317/1‑150 (MQ=255) gAGGCTCGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCGTGGCAg < 2:1047647/150‑1 (MQ=255) aGGCTCGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGt < 1:4027837/150‑1 (MQ=255) gCTCGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCGTGGCAGTgg < 2:1229765/150‑1 (MQ=255) cTCGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCGTGGCAGTggt < 2:2844047/150‑2 (MQ=255) cTCGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCGTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCATGTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCCCGGCAGTGGc < 2:495411/150‑1 (MQ=255) tCGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGcc > 1:4915944/1‑150 (MQ=255) cGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCGTGGCAGTggtta < 1:4294859/150‑4 (MQ=255) cGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCg < 1:3696064/150‑1 (MQ=255) cagcagGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCCCTGCGGCCTCGGTAACCACTGCCACTGCCGTGGcagtg < 2:3802014/150‑5 (MQ=255) cagcagGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACTGCCGTGGcagtg < 2:4701585/150‑5 (MQ=255) cagcagGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCa < 1:1985702/150‑1 (MQ=255) caggcgcaggcCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGcc < 1:3014490/150‑1 (MQ=255) aggcgcaggcCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGccc > 2:4265892/1‑150 (MQ=255) ggcCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGAcgc < 1:1047593/150‑1 (MQ=255) ggcCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGCGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGAcgc < 1:2093389/150‑1 (MQ=255) gcCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGAcgcg > 2:3738199/1‑150 (MQ=255) gcCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGAcgcg < 1:2555452/150‑1 (MQ=255) cgcgCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGa < 1:1437665/150‑1 (MQ=255) gcgcTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGAc > 2:2741000/1‑150 (MQ=255) cgcTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACg > 2:3523270/1‑150 (MQ=255) gcaggcaAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGt < 1:1814483/150‑1 (MQ=255) aggcaAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTcc > 2:2212846/1‑150 (MQ=255) gcaAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAg > 2:4960565/1‑150 (MQ=255) gcaAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAg < 1:4782153/150‑1 (MQ=255) aaGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGATGAACGTCCAGcc > 1:1003342/1‑150 (MQ=255) aaGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGcc > 2:147461/1‑150 (MQ=255) aGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCg < 1:584351/150‑1 (MQ=255) cTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCGTGGCAGTggttac < 2:842968/116‑5 (MQ=255) cTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCGTGGCAGTggttac > 1:842968/1‑112 (MQ=255) cTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCAc > 1:3157760/1‑150 (MQ=255) ttGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCAcc > 1:3412759/1‑150 (MQ=255) gtggagcgcCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCAcccc > 1:3150453/6‑150 (MQ=255) gcCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCgg < 2:4418420/150‑1 (MQ=255) gcCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCgg < 2:127912/150‑1 (MQ=255) cAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGt < 2:1251550/150‑1 (MQ=255) cAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGt > 1:1077092/1‑150 (MQ=255) aGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGtt < 2:2920238/150‑1 (MQ=255) gcgggcggCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTa < 1:4879896/150‑1 (MQ=255) gcgggcggCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTa < 1:5317928/150‑1 (MQ=255) gcgggcggCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTGGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTa > 2:4658669/1‑150 (MQ=255) ggcggcGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGc < 2:1643710/150‑1 (MQ=255) gcgcTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGa < 2:808621/150‑1 (MQ=255) tCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCa < 2:2445586/150‑1 (MQ=255) tCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCa < 2:2283263/150‑1 (MQ=255) ccACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCACGCGGGTTAGGCCTGAGCCAt > 2:613022/1‑150 (MQ=255) cACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATa > 1:4757793/1‑150 (MQ=255) cACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGACACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATa > 2:3932548/1‑150 (MQ=255) cGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACa > 1:2209401/1‑150 (MQ=255) gATCCTTTGCCGCAGGTCATCGTCCAGGGGCAGCAGTTCGGCGATGGCTCTGCGGCCTCGGTAGCCACTGCCGCGGCCGTGGCGGCCGCCCGTGACGCGGGCGCCCGTCGGGCCGGCCACGCCCTCGCGGGGTGGGCCGGAGccgggctg > 2:3170606/1‑144 (MQ=255) gATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAg > 1:2220871/1‑150 (MQ=255) gATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAg > 2:4209350/1‑150 (MQ=255) gATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAg > 2:4346654/1‑150 (MQ=255) aTCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAgg < 1:1375825/150‑1 (MQ=255) aTCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAgg < 2:1726877/150‑1 (MQ=255) cATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGgt < 2:745341/150‑1 (MQ=255) tttGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGgtgt > 1:1233705/1‑150 (MQ=255) tttGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGgtgt > 2:1017297/1‑150 (MQ=255) ttGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTgtc < 1:5053825/150‑1 (MQ=255) ttGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTgtc < 1:2846999/150‑1 (MQ=255) gCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTgtcgt < 2:5033614/150‑1 (MQ=255) cGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCa > 1:2928527/1‑150 (MQ=255) gCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCAt > 1:618783/1‑150 (MQ=255) gCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCAt > 1:4018159/1‑150 (MQ=255) gTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCgtg < 2:3500465/150‑1 (MQ=255) aGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGc > 2:4657048/1‑150 (MQ=255) aGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCCGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGc > 2:68784/1‑150 (MQ=255) gTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGt < 1:2641552/150‑1 (MQ=255) gcagcaGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTgg > 1:4698293/1‑150 (MQ=255) gcagcaGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTgg < 2:2603559/150‑1 (MQ=255) agcagTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGgcg > 1:5307538/1‑150 (MQ=255) gTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGt < 1:1658543/150‑1 (MQ=255) ttCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTg > 2:1253541/1‑150 (MQ=255) cGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCg < 1:1253541/150‑1 (MQ=255) ggCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCgg < 1:3327038/150‑1 (MQ=255) aaTGGCACTGCGGCCTCGGTAACCACTGCCGCGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTc < 2:3339372/126‑1 (MQ=255) aTGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGcag < 1:1308452/150‑1 (MQ=255) ggCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGcaggc < 2:4528518/150‑1 (MQ=255) gCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGcaggcc > 1:3241444/1‑150 (MQ=255) aCTGCGGCCGCGGTAACCACTGCCACGGCAGGGGCCGCAGCCCTGGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGGGTCGTCAGCGTGTTCGCAGGGCGTGGCGCAGTGCGGGcaggcaag > 1:2056201/1‑150 (MQ=255) cTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGcaggccagg < 1:1434573/150‑1 (MQ=255) cGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCATGGCGTGGCGCAGTGCGGGCAGGCCAGGCGa < 1:4265892/150‑1 (MQ=255) gCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAAt > 1:1780976/1‑150 (MQ=255) ccTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATc < 1:3683473/150‑1 (MQ=255) tCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAg > 2:1947201/1‑150 (MQ=255) aCCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCg < 2:1103816/125‑1 (MQ=255) aCCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCg > 1:1103816/1‑125 (MQ=255) ccACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTgg < 1:5353486/150‑1 (MQ=255) ccACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTgg > 1:669682/1‑150 (MQ=255) ccACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTgg < 1:5325230/150‑1 (MQ=255) cACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTggg > 1:5128646/1‑150 (MQ=255) cACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTggg > 1:3307037/1‑150 (MQ=255) cACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTggg > 1:269956/1‑150 (MQ=255) cACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTggg > 1:24315/1‑150 (MQ=255) aCTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTGGGc > 2:2646030/1‑150 (MQ=255) gCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTGGGCCAg < 1:4075147/150‑1 (MQ=255) ccACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTGGGCCAGt > 1:4009569/1‑150 (MQ=255) ccACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTGGGCCAGt > 2:92416/1‑150 (MQ=255) aCGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTGGGCCAGTAc > 2:4850294/1‑150 (MQ=255) | GGGCCGAGGCTCGCAGCAGGCGCAGGCCGCGCTGGCAGGCAAGCGTCTTGATCTGCGCCAGCGGGCGGCGCTCCACGATCATTTGCCGCAGGTCATCGTCCAGGTGCAGCAGTTCGGCAATGGCACTGCGGCCTCGGTAACCACTGCCACGGCAGTGGCCGCAGCCCTTGACGCGGACGAACGTCCAGCCGGCCACCCCCTCGCGGGTTAGGCCTGAGCCATACAGGGTGTCGTCATCGTGTTCGCAGGGCGTGGCGCAGTGCGGGCAGGCCAGGCGAATCAGGCGCTGGGCCAGTAC > NC_002947/3948280‑3948577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |