| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,834,021 | A→T | 5.8% | intergenic (+29/+123) | pvdS → / ← pvdY | alternative sigma factor/hydroxyproline acetylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,834,021 | 0 | A | T | 5.8% | 632.4 / 19.7 | 191 | intergenic (+29/+123) | pvdS/pvdY | alternative sigma factor/hydroxyproline acetylase |
| Reads supporting (aligned to +/- strand): ref base A (91/89); new base T (6/5); total (97/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.49e-01 | |||||||||||
Only 100 of 197 total aligned reads displayed.
CCTTAATGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGAAAAA > NC_002947/4833872‑4834170 | ccTTAATGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGaa < 2:901938/150‑1 (MQ=255) ttAATGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAAcc > 2:2455812/1‑150 (MQ=255) tAATGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCt > 1:1645816/1‑150 (MQ=255) gTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGc > 2:5011619/1‑150 (MQ=255) tGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGct > 2:2101023/1‑150 (MQ=255) aGGACATTGCCAAGGAACTGGGTGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAAAGCGAGAGCGATCCAGGTTCGCTCTGGCgttt < 1:2833122/150‑1 (MQ=38) ggACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTttg > 2:1933570/1‑150 (MQ=255) gACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGGCTGCAAGCAAAAGCGAGAGCGATCCAGGTTCGCTCTGGCGTttgc < 2:1228554/150‑1 (MQ=38) gACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGGCTGCAAGCAAAAGCGAGAGCGATCCAGGTTCGCTCTGGCGTttgc < 2:2856212/150‑1 (MQ=38) gACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTttgc < 2:1842204/150‑1 (MQ=255) aTTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTttgcttg > 2:166206/1‑150 (MQ=255) aTTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTttgcttg < 1:3479726/150‑1 (MQ=255) tGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAAAGCGAGAGCGATCCAGGTTCGCTCTGGCGTTTGCTTGCa < 1:2975784/150‑1 (MQ=37) cAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAgcg > 2:4238289/1‑150 (MQ=255) cAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAgcg > 1:1429527/1‑150 (MQ=255) aaGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTttg < 2:3062652/140‑1 (MQ=255) aaGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTttg > 1:3062652/1‑140 (MQ=255) aaGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAgcgc < 2:650471/150‑1 (MQ=255) aGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCt < 1:1136140/150‑1 (MQ=255) cTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTAt < 1:4084526/150‑1 (MQ=255) ggCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGgt < 1:1673709/150‑1 (MQ=255) aTCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGtttt < 1:670373/150‑1 (MQ=255) aTCGCCGACCGTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGtttt < 2:3906625/150‑1 (MQ=255) ccGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCaa > 1:4434090/1‑150 (MQ=255) cGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCaaa > 1:2246937/1‑150 (MQ=255) gACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAAt > 2:4144246/1‑150 (MQ=255) ccTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATAc > 2:3950787/1‑150 (MQ=255) tGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGc < 2:1429527/150‑1 (MQ=255) tGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGc < 2:1497008/150‑1 (MQ=255) aaCTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATa > 2:684485/1‑150 (MQ=255) ttCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTCGTATGGTGTTTTGCAAATACGGCCAATAACt > 1:4526426/1‑150 (MQ=255) tCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTc > 2:2372358/1‑150 (MQ=255) gATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAg < 1:369035/150‑1 (MQ=255) tCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAgcg > 2:3395494/1‑150 (MQ=255) gATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCaaaa < 1:425862/150‑1 (MQ=255) tGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGct < 2:1376662/83‑1 (MQ=255) gcTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgc < 2:521628/150‑1 (MQ=255) tGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgccg > 2:2459164/1‑150 (MQ=255) tGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCaa < 1:1345974/150‑1 (MQ=255) tGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCaa < 1:1097296/150‑1 (MQ=255) tGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCaa < 2:3533578/150‑1 (MQ=255) aTTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGtt > 2:4001419/1‑150 (MQ=255) ttGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTa > 1:3781221/1‑150 (MQ=255) gCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATg < 2:3669791/150‑1 (MQ=255) ccGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATgg > 1:2701467/1‑150 (MQ=255) cGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGt > 1:2142654/1‑150 (MQ=255) gACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAATCGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTa > 2:782172/1‑150 (MQ=255) cGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAtt > 1:2533848/1‑150 (MQ=255) cGGCCAGTCGCCAGGCCTGAAGATGACGGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAtt > 2:4652939/1‑150 (MQ=255) ggCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt < 1:4806720/150‑1 (MQ=255) ggCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt < 1:4693362/150‑1 (MQ=255) ggCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt > 2:2102345/1‑150 (MQ=255) atctaGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt < 1:4050940/146‑1 (MQ=255) ccAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATc > 1:3677337/1‑54 (MQ=255) ccAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgt < 1:574391/150‑1 (MQ=255) ccAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgt < 1:5031258/150‑1 (MQ=255) cAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAgcgc > 2:1674807/1‑117 (MQ=255) cAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAgcgc < 1:1674900/117‑1 (MQ=255) cAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgtg > 1:2591777/1‑150 (MQ=255) cAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTGATGGTCGTTATTtgtg > 2:3726720/1‑150 (MQ=255) gTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGaa > 2:4720087/1‑150 (MQ=255) gTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGaa > 2:3697581/1‑150 (MQ=255) ccAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAacac < 1:684485/150‑1 (MQ=255) cAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAAcacc > 2:1320192/1‑150 (MQ=255) aGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAAcacca < 1:5211593/150‑1 (MQ=255) aGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAAcacca < 1:4957752/150‑1 (MQ=255) gCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGACCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACcaca < 1:5338176/150‑1 (MQ=255) tGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCa > 2:3841919/1‑100 (MQ=255) tGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTa > 2:262014/1‑150 (MQ=255) tGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTa > 2:4660665/1‑150 (MQ=255) aaGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGc < 2:4088440/150‑1 (MQ=255) aaGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTAGGGTCGTTATTTGTGAAACACCACACTAGc > 2:4295638/1‑150 (MQ=255) aaGATGACTGCAAGCAAACGCAAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACTGCCAATAACTCGCAGAGCAAAAAACGCCGCAAGTTATGGTCGTTATGTGTGAAACACCacacaatc > 1:1038552/1‑146 (MQ=255) aGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAATCACCACACTAGcc < 2:567969/150‑1 (MQ=255) aGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGcc < 1:2005014/150‑1 (MQ=255) tagcgcTGCAAGCAAAAGCGAGAGCGATCCAGGTTCGCTCTGGCGTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGccc > 1:1049000/6‑150 (MQ=25) gATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGccc < 1:2162348/150‑1 (MQ=255) aTGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGcccc > 1:1226893/1‑150 (MQ=255) aTGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGcccc > 1:1226725/1‑150 (MQ=255) aTGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGcccc < 2:1548816/150‑1 (MQ=255) tGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCt < 1:166206/150‑1 (MQ=255) gACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgt < 1:3882377/129‑1 (MQ=255) gACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGAGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTa < 2:3689954/150‑1 (MQ=255) aCTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTAc > 1:4243130/1‑150 (MQ=255) tGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGt > 1:4095540/1‑150 (MQ=255) tGCAAGCAAAAGCGAGAGCGATCCAGGTTCGCTCTGGCGTTTGCTTGCAGTGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAAcacca > 1:1592205/1‑135 (MQ=25) caagcaaACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCTTTATTTGTGAAACACCACACTAGCCCCTACGTCa < 2:1473341/150‑1 (MQ=255) aagcaaACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAg > 2:1690556/1‑150 (MQ=255) agcaaAAGCGAGAGCGATCCAGGTTCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGc > 2:3155510/1‑150 (MQ=39) gcaaACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCt < 1:4258046/150‑1 (MQ=255) gcaaACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCt > 1:2782031/1‑150 (MQ=255) gCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAAc > 2:3054010/1‑150 (MQ=255) gCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCCCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAAc < 1:2101023/150‑1 (MQ=255) cAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGa > 2:5292205/1‑150 (MQ=255) agagCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGAt < 1:2389761/150‑1 (MQ=255) gagCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATc < 1:3646260/150‑1 (MQ=255) agCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCg < 1:265147/150‑1 (MQ=255) aCCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGaaaaa > 2:4353864/1‑150 (MQ=255) aCCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGaaaaa < 2:1645796/150‑1 (MQ=255) aCCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGaaaaa > 2:5068391/1‑150 (MQ=255) | CCTTAATGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGAAAAA > NC_002947/4833872‑4834170 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |