Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,863,129 G→A 7.2% intergenic (‑113/+124) ligA ← / ← PP_4275 DNA ligase/cell division protein ZipA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,863,1290GA 7.2% 456.2 / 17.4 158intergenic (‑113/+124)ligA/PP_4275DNA ligase/cell division protein ZipA
Reads supporting (aligned to +/- strand):  ref base G (89/54);  new base A (4/7);  total (96/62)
Fisher's exact test for biased strand distribution p-value = 1.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.71e-01

Only 100 of 159 total aligned reads displayed.

GGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACG  >  NC_002947/4862981‑4863276
                                                                                                                                                     |                                                                                                                                                     
 gCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTc                                                                                                                                                     >  2:3966157/1‑150 (MQ=255)
    cGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAAACCCCACCCACAAGGGCggccca                                                                                                                                                  >  1:3221542/1‑145 (MQ=255)
         ttCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGccc                                                                                                                                             >  1:4856083/1‑150 (MQ=255)
          tCGAGGATACGGGTTTCGGCGGTCATGGGATTTGACTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCt                                                                                                                                            <  2:1908683/150‑1 (MQ=255)
             aGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAgg                                                                                                                                         <  2:1537724/150‑1 (MQ=255)
             aGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAgg                                                                                                                                         >  2:453055/1‑150 (MQ=255)
             aGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAgg                                                                                                                                         >  2:3502077/1‑150 (MQ=255)
                aTACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCg                                                                                                                                     >  1:1132315/1‑150 (MQ=255)
                aTACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCg                                                                                                                                     <  2:3838747/150‑1 (MQ=255)
                aTACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACCGCCCTAGGGcat                                                                                                                                     <  2:2188840/150‑3 (MQ=255)
                  aCGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGt                                                                                                                                   <  2:1052618/150‑1 (MQ=255)
                  aCGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCATCACCGCCCTAGGGcatgt                                                                                                                                   <  1:622388/150‑5 (MQ=38)
                    gggTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGa                                                                                                                                 <  1:1882365/150‑1 (MQ=255)
                    gggTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGa                                                                                                                                 <  1:3015326/150‑1 (MQ=255)
                     ggTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGAt                                                                                                                                <  2:1325698/150‑1 (MQ=255)
                     ggTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGAt                                                                                                                                <  1:2025180/150‑1 (MQ=255)
                     ggTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGAt                                                                                                                                <  1:5105732/150‑1 (MQ=255)
                            gcggTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTg                                                                                                                         <  1:4262312/150‑1 (MQ=255)
                               gTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAg                                                                                                                      <  1:5023431/150‑1 (MQ=255)
                               gTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAg                                                                                                                      <  1:5170034/150‑1 (MQ=255)
                               gTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCGGTAg                                                                                                                      >  2:2960647/1‑150 (MQ=255)
                                   tGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGc                                                                                                                  <  2:3610661/150‑1 (MQ=255)
                                    gggATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTGCCACAAGGGCGTGACATGCCCTAGGGGGGTGATGTAGGTGTTGGAGCg                                                                                                                >  2:4632136/1‑150 (MQ=255)
                                    gggATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCg                                                                                                                <  1:1472658/150‑1 (MQ=255)
                                     ggATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCgg                                                                                                               <  2:2515065/150‑1 (MQ=255)
                                      gATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCggg                                                                                                              <  2:3848958/150‑1 (MQ=255)
                                       aTTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGt                                                                                                             <  1:3403243/150‑1 (MQ=14)
                                       aTTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGt                                                                                                             <  1:138900/150‑1 (MQ=14)
                                            tcttctCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTAcc                                                                                                        >  1:4464072/1‑150 (MQ=14)
                                            tcttctCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACAAGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTaac                                                                                                        >  1:4489415/1‑148 (MQ=255)
                                             cttctCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCCCGCCCACAAGGGCGTCACATGCCCGAGGGCGGTGATGTACCGGGAGGAGCCGGTTTAccc                                                                                                       >  2:938547/1‑150 (MQ=255)
                                              ttctCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACACGCGCACCCCACGGCGGCACAAGCCCACGGGCCGTGATTTAACCGTTGGATCCGGTTTAaccc                                                                                                      >  1:1105550/1‑149 (MQ=255)
                                               tctcTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCcgc                                                                                                     >  2:4950666/1‑150 (MQ=255)
                                               tctcTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACAAGCCCGAGGGCGGTGATGTACCGGTAGGAGCGGGTTTACCcgc                                                                                                     >  2:1843698/1‑150 (MQ=255)
                                               tctcTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAAACCCCACCCACACGGGCGTCACATGCCCGAGGGCGGTGATGTAACAGTAGGAGCGGGGTTAccccc                                                                                                     >  1:4596654/1‑148 (MQ=255)
                                                 tctTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGGTATACCCCGCCCACAAGGGCGGGACAAGCCCGAGGGCGGGGGTGTGCCGGGTGGTGCGGGTGTTACCGCGa                                                                                                   >  1:636720/1‑150 (MQ=255)
                                                 tctTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTTAACCCGCGCCCCCAAGGGCGGCACATGCCCGAGGGCGGGGGTGTGCCGGGAGGAGCGGGGTTTAccccgc                                                                                                    >  1:2476362/1‑147 (MQ=255)
                                                 tctTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGa                                                                                                   >  2:4818295/1‑150 (MQ=255)
                                                 tctTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGa                                                                                                   >  2:4421977/1‑150 (MQ=255)
                                                  ctTGCAAAGCAAAAGAGCAGCTGGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACAGGCCCTAGGGCGGTGTTGTACCTGTAGGAGCGGGTTTACCCGCGaa                                                                                                  <  2:3961019/150‑1 (MQ=255)
                                                   ttGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAag                                                                                                 >  2:2468055/1‑150 (MQ=255)
                                                   ttGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAag                                                                                                 <  2:3242638/150‑1 (MQ=255)
                                                   ttGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGGGATGTACCGGTAGGAGCGGGTTTACCCGCGAag                                                                                                 >  2:5344297/1‑150 (MQ=255)
                                                     gctttgcaagAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAagag                                                                                               >  2:2776503/6‑150 (MQ=255)
                                                     gcaaagcaaaAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACAAGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCCCGAagag                                                                                               >  1:4482330/1‑150 (MQ=255)
                                                       aaagcaaaAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGGGAACCCCCTCCCCCAAGGGCGGGACAAGCCCAACGGCGGGGGTGTAACGGTAGGAGCCGGTTTAACCCCCAAGAGGc                                                                                             >  1:994536/1‑150 (MQ=255)
                                                          gcaaaAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCTGGTGTCTGTTGACTGGGCCAGCCTCTTCGCGGTTAAACCCGCTCCCACAAGGGCGTCACATGCCCTCGGGCGGTGATGTACCTGTAGGAGCGGTTTTACCCGCGAAGAGGCCgg                                                                                          <  2:4826177/150‑1 (MQ=38)
                                                          gcaaaAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCGAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                                          >  2:809346/1‑150 (MQ=255)
                                                           caaaAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTATGGCGGTGATGTACCGGTAGGAGCGGGTTTAACCGCGAAGAGGCCGGc                                                                                         >  2:2924829/1‑150 (MQ=255)
                                                           caaaAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGGAAACCCCCGCCCCCAACGGCGTCAAAAGCCCAAGGGCGGGGATGTACCTGGAGGAGCGGGGTTTAACCCGAAGAGGCCCGc                                                                                         >  1:4688467/1‑150 (MQ=255)
                                                            aaaaGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcc                                                                                        >  2:4278694/1‑149 (MQ=255)
                                                            aaaaGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACAAGCCCTAGGGCGGTGATGTACCTGGAGGAGCGGGTTTACCCGCGAAGAGGCCGGca                                                                                        >  2:4278432/1‑150 (MQ=255)
                                                             aaaGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCGCCCACAAGGGCGTCACAAGCCCTAGGGCGGGGCTGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcac                                                                                       >  1:4432581/1‑150 (MQ=255)
                                                             aaaGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAAACCCCGCCCACAAGGGCGTCACAAGCCCAAGGGCGGTGCTGTACCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcac                                                                                       >  1:3946110/1‑150 (MQ=38)
                                                                      gtgggggTGGTGGGGGGGTTGCCTGGTGTCTGTTGAGTGGGCCCGCCTCTTCGGGGTTAAACCCGCCCCAACCGGGGCGACACTGGCCCTGGGGGGGTTTTGTACGTTTGGGCGGGGTTTTCCCCGCGAAGAGGCCGGCACAGGCAacga                                                                              <  2:1105550/147‑1 (MQ=255)
                                                                      cTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTGAACCCCCTCCCACAAGGGCGTCACAAGCCCTAGGGCGGGGGTGTAGCTGTGGGGGCGGGTTTTCCCGCGCAGAGGCCGGCCCAGGCCacgc                                                                              >  1:3825563/1‑149 (MQ=37)
                                                                         ggggTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTAcc                                                                                                        >  2:4939437/1‑121 (MQ=255)
                                                                            gtggtgCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAAACCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATaa                                                                        >  2:1112186/1‑149 (MQ=255)
                                                                              gggggggggggTCCCTGGTTTTTGTTGACTGTGCCAGCATGTCCGGGGTTAAACCCGCGCCCACCCGGGGGTAACTGCCCCTTGGGGGTTTTTTAACGTTTTGGAGCGTTTTTACCCGCGAAGAGGCCGGAACAGGCAACGACGATAccc                                                                      <  2:2518033/143‑1 (MQ=255)
                                                                                        gTTCCAGGTGTCTGTTGACTGGGCCAGCCTCTGCGCGGGTAACCCCGCTCCCACACGGGCGTCACAGGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCa                                                            <  2:5353530/150‑1 (MQ=38)
                                                                                         ttCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAg                                                           >  2:380411/1‑150 (MQ=255)
                                                                                         ttCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAg                                                           >  2:380257/1‑150 (MQ=255)
                                                                                         ttCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCGCCCACAAGGGGGTGACAAGCCCTAGGGCGGTGATGTACCAGTAGGAGCGGGTTTACACGCGAAGAGGCCGGCACCGGCCACGACGATACCCGAACCCGCCAg                                                           >  2:5015977/1‑150 (MQ=38)
                                                                                               gtgtCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATg                                                                                                                               >  2:2308434/1‑77 (MQ=255)
                                                                                               gtgtCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATg                                                                                                                               <  1:2308434/77‑1 (MQ=255)
                                                                                                   gtGTTGAGTGGGCCAGCCTCTTCGGGGTTAAACCCGCGCCCACCCGGGCGCCACTGGCCCTCGGGGGTTGTTGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCa                                                 <  2:5182292/149‑1 (MQ=25)
                                                                                                   gtGTTCACTGGGCCCGCCTCTGCGGGGTTAAACCCGCCCCCACAGGGGCTACACATGCCCTCGGGGGGTTTTGTCCGTGTTGGCGGGGTTTTCCCCGCCAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCa                                                 <  2:3789027/149‑1 (MQ=255)
                                                                                                    tGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCCGCACGCCCTCAg                                                >  2:3586521/1‑150 (MQ=255)
                                                                                                    tGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAg                                                >  2:1262574/1‑150 (MQ=255)
                                                                                                      ttGACTGTCCCCCCCTCTTCGCGGTTAAACCCGCACCCAAACGGGGGAAACTTCCCCTTGGGGGTTTTTTTACCTGTTGGAGGGTTTTAACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGgc                                              <  2:2041170/150‑1 (MQ=255)
                                                                                                               ccAGCCTCTTCGCGGGTAAACCCCCGCCCACAACGGCCTCACATGCCCCAGGGCGGGGATGTACCGGGAGGCGCCGGGGTACCCGCGAAGAGGCCCGCCCCCGCAACCCCCAACACCGCACCGGCCCGCCCCCCCACAggcggcgcgtgc                                     >  2:5138286/1‑144 (MQ=255)
                                                                                                                     tctTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATTCCCGAGGGCGGTGTTGTACCTGTAGGAGCGGGTTTACCCCCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCACAGGCTGCTCGTTCGTCTgg                               >  2:1492684/1‑150 (MQ=38)
                                                                                                                     tctTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTgg                               >  2:3631964/1‑150 (MQ=255)
                                                                                                                     tctTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTgg                               >  2:2213076/1‑150 (MQ=255)
                                                                                                                     tctTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACCATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTgg                               >  1:2229900/1‑150 (MQ=255)
                                                                                                                          gcgGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTg                          >  1:1140630/1‑150 (MQ=255)
                                                                                                                           cgGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGt                         >  1:2589715/1‑150 (MQ=255)
                                                                                                                              ggaacccccGCTCCCACCCGGGCGCCACGGGCCCGGGGGGGGTGTTGCCCGTGTCGGCGGGGTTTCCCCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCa                       <  2:656113/144‑1 (MQ=255)
                                                                                                                              ggTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCa                       >  2:34345/1‑150 (MQ=255)
                                                                                                                              ggTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCa                       <  2:1770828/150‑1 (MQ=255)
                                                                                                                               gTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAg                      >  2:1846280/1‑150 (MQ=255)
                                                                                                                               gTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAAACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAg                      >  1:1758815/1‑150 (MQ=255)
                                                                                                                                  aaCCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAgcgc                   >  1:4110677/1‑150 (MQ=255)
                                                                                                                                   aCCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCt                  >  2:1119734/1‑150 (MQ=14)
                                                                                                                                   aCCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTGTCGTCTGGATCTGTCAGCGCt                  >  1:52675/1‑150 (MQ=14)
                                                                                                                                   aCCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCt                  >  1:284984/1‑150 (MQ=255)
                                                                                                                                    cccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCtt                 >  2:3098937/1‑150 (MQ=255)
                                                                                                                                     ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTc                >  1:1210814/1‑150 (MQ=255)
                                                                                                                                     ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTc                >  1:3082241/1‑150 (MQ=255)
                                                                                                                                     ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTc                >  1:3284044/1‑150 (MQ=255)
                                                                                                                                     ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTc                >  2:787639/1‑150 (MQ=255)
                                                                                                                                     ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTc                >  1:1099513/1‑150 (MQ=255)
                                                                                                                                       gCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTg              >  1:1256361/1‑150 (MQ=255)
                                                                                                                                         tCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTggg            >  1:2696610/1‑150 (MQ=255)
                                                                                                                                         tCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTggg            >  2:2160229/1‑150 (MQ=255)
                                                                                                                                         tCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTggg            >  2:5280309/1‑150 (MQ=255)
                                                                                                                                             acaAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAg        >  1:3450442/1‑150 (MQ=255)
                                                                                                                                             acaAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAg        >  1:509860/1‑150 (MQ=255)
                                                                                                                                                 gggCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCa    >  2:646708/1‑150 (MQ=255)
                                                                                                                                                   gCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACg  <  2:284984/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACG  >  NC_002947/4862981‑4863276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: