| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,972,571 | G→C | 6.1% | intergenic (‑362/+32) | fliC ← / ← PP_4379 | flagellin/3‑oxoacyl‑ACP synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,972,571 | 0 | G | C | 6.1% | 599.2 / 21.3 | 180 | intergenic (‑362/+32) | fliC/PP_4379 | flagellin/3‑oxoacyl‑ACP synthase |
| Reads supporting (aligned to +/- strand): ref base G (77/92); new base C (7/4); total (84/96) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
Only 100 of 185 total aligned reads displayed.
TCATCCCGTCGGTGGAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTGGAG > NC_002947/4972422‑4972720 | tCATCCCGTCGGTGGAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTg > 1:4273967/1‑150 (MQ=255)tCACCCCGTGGGTGGCGCGGGTGCGGCTGCGACGACGGCGCCGCGCGGGGGGGCACGGGCTGGGCGGGTGTTCGGGGGTGAACCCGCTCCTACACTGGGCTGCGTTCGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTg < 1:537056/150‑1 (MQ=255) cATCCCGTCGGTGGAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTgg < 1:2181024/150‑1 (MQ=255) ccGTCGGTGGAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGgccgc > 2:183832/1‑150 (MQ=255) ggTGGCGCGGGTGAGGCTGCGAAGACGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCGGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGgc < 1:1772173/150‑1 (MQ=255) ggTGGAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCGCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGgc < 2:5018570/150‑1 (MQ=255) gcgCGGGGGCGGCTGCGACGAAGGAGACGCGCTGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAACGCGCCGGGCGGTGGCCGCCGGGCGCtt < 1:1559275/148‑1 (MQ=38) gAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCtg > 1:4405394/1‑149 (MQ=255) gggggTGCGGCTGCTAAGAAGGAGACGCGCGGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCACCTACAAGGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAC‑AAAAAAAAGCGCCCGGCGGCCACCGCCCGGCGCtttt < 1:1632770/148‑1 (MQ=37) cGGGTGAGGCTGCGAAGAAGGAGACGCGTGGGGTGGCACCGGCTTTGCCGGTGTGCGCGGGTGAACCCGCTCCTACAATGGGCGGCGTTAGGCAGACGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCttttt < 1:3512031/150‑2 (MQ=39) cGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTa < 2:1488829/150‑1 (MQ=255) gggTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAg < 2:4438754/150‑1 (MQ=255) gggTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAg > 2:2550027/1‑150 (MQ=255) gCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTg > 2:4971317/1‑150 (MQ=255) gCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTg > 1:2911617/1‑150 (MQ=255) gaagaaGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTggg > 1:676279/1‑150 (MQ=255) gaagaaGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTggg > 1:2623693/1‑150 (MQ=255) gaagaaGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTggg > 1:3322906/1‑150 (MQ=255) atgatggAGCCGCGAGGGGTGGCACGGGCTTTGCGGGTTTTCGCGGGTTAACCCGCTCCTACAAGGGGCTGGGTTCGGCAGAAGCTTATTTCCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGa < 1:4660018/145‑1 (MQ=255) aagaagGAGCCGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGa < 1:3335877/150‑1 (MQ=255) gacggAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATc < 1:2061718/147‑1 (MQ=255) cggAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAg < 1:3112060/149‑1 (MQ=255) ggAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGt > 1:3137206/1‑150 (MQ=255) gagaCGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTc > 1:551720/1‑150 (MQ=255) cgcgATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACCATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAGAAAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTcgcg < 2:2225731/150‑1 (MQ=255) cgcgATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCgg < 2:2620703/150‑1 (MQ=255) gcgATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGgc < 2:1178741/118‑1 (MQ=255) gcgATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGt > 2:4789167/1‑150 (MQ=255) cgATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTa > 2:3894885/1‑150 (MQ=255) aTGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACa < 2:332427/150‑1 (MQ=255) aTGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACa > 1:2361536/1‑150 (MQ=255) tGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAg < 1:4941996/150‑1 (MQ=255) ccgcgaacACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAg > 2:1091469/8‑150 (MQ=255) gTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGAt < 1:2211470/150‑1 (MQ=255) tGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATg < 2:1482115/150‑1 (MQ=255) tGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATg > 2:3410539/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAATAATCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCg > 2:1785308/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCg > 1:4205836/1‑150 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCg > 1:1459060/1‑150 (MQ=255) ggCTTGGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGc < 1:4633780/150‑1 (MQ=255) ttGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCa < 1:4115314/150‑1 (MQ=255) tGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCAc < 1:3605715/150‑1 (MQ=255) gCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTGTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACg > 2:3603423/1‑150 (MQ=255) cGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGAc > 1:369065/1‑150 (MQ=255) cGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCCGGCGGCCACCGCCCGGCGCtttt < 1:3954601/101‑1 (MQ=38) gtgtTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAg > 1:2949403/1‑150 (MQ=255) ttCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGcc < 1:837875/150‑1 (MQ=255) gcgGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCAc < 2:457289/150‑1 (MQ=255) gcgGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCAc < 1:1188500/150‑1 (MQ=255) gAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCaaa > 1:2464826/1‑150 (MQ=255) gAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCaaa < 1:3675223/150‑1 (MQ=255) gAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTAGTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCaaa < 2:2037133/150‑1 (MQ=255) aaCCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAg < 1:1223518/150‑1 (MQ=255) cccGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGTCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGcc > 2:3183924/1‑150 (MQ=255) cccGCTCCTACAATGGGCTGCGGTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTGTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGCTGGCCGAGCCCCACGCCCGGCCCACGCCAAAGcc > 2:3743495/1‑150 (MQ=255) ccGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCa > 1:1326085/1‑150 (MQ=255) cTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATc < 1:2455557/150‑1 (MQ=255) tACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAGGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCg > 1:932099/1‑150 (MQ=255) tACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCg > 1:457793/1‑150 (MQ=255) tACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCg > 2:1721777/1‑150 (MQ=255) gggCTGGGTTCGGCCGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCAcgc < 1:4682444/150‑1 (MQ=255) gggCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCAcgc < 2:1459060/150‑1 (MQ=255) gggCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCAcgc < 2:4205836/150‑1 (MQ=255) gCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGAt > 1:2138123/1‑140 (MQ=255) gCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACgcgc > 2:5252053/1‑150 (MQ=255) cTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCt < 2:2469327/150‑1 (MQ=255) tGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCtt > 2:4665796/1‑150 (MQ=255) tGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCtt > 2:924826/1‑150 (MQ=255) ttAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAg < 1:622786/150‑1 (MQ=255) aGGCAGACGCTTATTTTCGGCAG‑AAAAAAAAGCGGCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCt < 2:4069355/150‑1 (MQ=255) aGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCt < 1:5100817/150‑1 (MQ=255) aGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTAc > 1:4463619/1‑84 (MQ=255) aGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCa > 2:606153/1‑150 (MQ=255) aGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCa > 1:1536998/1‑150 (MQ=255) aGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCa > 2:3625205/1‑150 (MQ=255) aGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCa > 1:4742611/1‑150 (MQ=255) gCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAg > 1:81767/1‑103 (MQ=255) gCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAg < 2:81767/103‑1 (MQ=255) gCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGa < 1:1082444/150‑1 (MQ=255) gCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGa < 1:1091469/150‑1 (MQ=255) ttttCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACCGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCAtg < 2:4342071/150‑1 (MQ=255) tttCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAgg > 2:2945929/1‑77 (MQ=255) cAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCt < 2:676279/150‑1 (MQ=255) aG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTc > 2:3847239/1‑148 (MQ=255) aG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTg < 1:3830682/150‑1 (MQ=255) g‑AAAAAAATGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTgc > 2:3812393/1‑150 (MQ=255) ccctaaaaGCGCCCGGCGGCCACCGCCCGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCCGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGTCATCGAGCATGTGCTTCTgaa > 2:333570/5‑148 (MQ=38) cctaaacGCGCCCGGCGGCCACCGCCCGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCAc < 1:4972356/101‑1 (MQ=37) cctaaaaGCGCCCGGCGGCCACCGCCCGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCAc < 1:4972211/101‑1 (MQ=37) cctaaaaGCGCCCGGCGGCCACCGCCCGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCAc > 2:4972356/4‑104 (MQ=37) aaaaaaGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTgcagc > 1:1976965/1‑150 (MQ=255) aaaGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTgcagcagc < 2:2623729/150‑1 (MQ=255) aGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGcagcagcag > 1:3167124/1‑150 (MQ=255) aGCGCCCGGCGGCCACCGCCCGGCGCTTTTTGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGcagcagcag > 1:189416/1‑150 (MQ=255) gcCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCgg > 1:5279093/1‑150 (MQ=255) gcCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCgg > 1:3934803/1‑150 (MQ=255) gcCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTAGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCgg > 1:2874547/1‑150 (MQ=255) ggTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTg < 2:521642/150‑1 (MQ=255) ggTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTg < 2:521774/150‑1 (MQ=255) tGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTgga < 2:457793/150‑1 (MQ=255) | TCATCCCGTCGGTGGAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTGGAG > NC_002947/4972422‑4972720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |