| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,972,578 | G→C | 6.1% | intergenic (‑369/+25) | fliC ← / ← PP_4379 | flagellin/3‑oxoacyl‑ACP synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,972,578 | 0 | G | C | 6.1% | 592.9 / 20.5 | 179 | intergenic (‑369/+25) | fliC/PP_4379 | flagellin/3‑oxoacyl‑ACP synthase |
| Reads supporting (aligned to +/- strand): ref base G (73/94); new base C (7/4); total (81/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 183 total aligned reads displayed.
GTCGGTGGAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTGGAGGACA > NC_002947/4972429‑4972724 | ggTGGAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGgc < 2:5018495/150‑1 (MQ=255) ggcgggggTGAGGCTGCGAAGATGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGATGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCt < 2:3619986/145‑1 (MQ=255) gAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCtg > 1:4405394/1‑149 (MQ=255) cGGGTGAGGCTGCGAAGAAGGAGACGCGTGGGGTGGCACCGGCTTTGCCGGTGTGCGCGGGTGAACCCGCTCCTACAATGGGCGGCGTTAGGCAGACGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCttttt < 1:3512031/150‑2 (MQ=39) cGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTa < 2:1488829/150‑1 (MQ=255) gggTGAGGCTGCGAAGACGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTGCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAg < 2:1809137/150‑1 (MQ=255) gggTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAg > 2:2550027/1‑150 (MQ=255) ggTGAGGCTGCGACGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAAGGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCttttttt < 2:4793953/150‑4 (MQ=255) gTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAggg > 2:658065/1‑150 (MQ=255) gCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGa < 2:3347687/150‑1 (MQ=255) gCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTg > 1:2911617/1‑150 (MQ=255) gCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTg > 2:694567/1‑150 (MQ=255) gaagaaGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTggg > 1:676279/1‑150 (MQ=255) gaagaaGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTggg > 1:2623729/1‑150 (MQ=255) gaagaaGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTggg < 2:442150/150‑1 (MQ=255) atgatggAGCCGCGAGGGGTGGCACGGGCTTTGCGGGTTTTCGCGGGTTAACCCGCTCCTACAAGGGGCTGGGTTCGGCAGAAGCTTATTTCCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGa < 1:4660018/145‑1 (MQ=255) aagaagGAGCCGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGa < 1:3335877/150‑1 (MQ=255) gacggAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATc < 1:2061718/147‑1 (MQ=255) gaagGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCTTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATc < 1:2061690/150‑1 (MQ=255) cggAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAg < 1:3112060/149‑1 (MQ=255) ggAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGt > 1:4662241/1‑150 (MQ=255) ggAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGt > 1:3137206/1‑150 (MQ=255) gagaCGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTc > 1:551720/1‑150 (MQ=255) gaCGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTcgc > 1:457289/1‑150 (MQ=255) gaCGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTcgc > 1:4107133/1‑150 (MQ=255) gaCGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTcgc < 1:3152915/150‑1 (MQ=255) aCGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGAAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTcgcg < 1:4706755/150‑1 (MQ=255) cgcgATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACCATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAGAAAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTcgcg < 2:2225731/150‑1 (MQ=255) cgcgATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCgg < 2:2620703/150‑1 (MQ=255) gcgATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGgc < 2:1178741/118‑1 (MQ=255) gcgATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGt > 2:4789167/1‑150 (MQ=255) aTGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACa < 2:332427/150‑1 (MQ=255) aTGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACa > 1:2361536/1‑150 (MQ=255) ccgcgaacACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAg > 1:4760621/8‑150 (MQ=255) ccgcgaacACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAg > 2:1091469/8‑150 (MQ=255) ccgcgaacACCGGCAAAGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑‑AAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAgg > 2:1746830/8‑150 (MQ=39) gTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGAt < 1:2211470/150‑1 (MQ=255) tGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATg < 2:1482104/150‑1 (MQ=255) aCCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCg > 1:1459060/1‑150 (MQ=255) ggCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGc < 1:5315954/150‑1 (MQ=255) ggCTTGGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGc < 1:4633780/150‑1 (MQ=255) tGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCAc < 1:3605715/150‑1 (MQ=255) ccGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGa > 1:5120984/1‑150 (MQ=255) cGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCCGGCGGCCACCGCCCGGCGCtttt < 1:3954601/101‑1 (MQ=38) cGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCCGGCGGCCACCGCCCGGCGCtttt > 2:3954601/1‑101 (MQ=38) gtgtTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAg > 1:2949403/1‑150 (MQ=255) ttCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGcc < 1:837875/150‑1 (MQ=255) gcgGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCAc < 1:1188500/150‑1 (MQ=255) gggTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGc < 1:1594978/150‑1 (MQ=255) gAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCaaa < 1:3675223/150‑1 (MQ=255) gAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCaaa > 1:2464826/1‑150 (MQ=255) gAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTAGTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCaaa < 2:2037133/150‑1 (MQ=255) aaCCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAg < 1:1223518/150‑1 (MQ=255) cccGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGTCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGcc > 2:3183924/1‑150 (MQ=255) cccGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGcc < 1:3287046/150‑1 (MQ=255) cccGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑‑AAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCa < 1:1746830/150‑1 (MQ=255) cccGCTCCTACAATGGGCTGCGGTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTGTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGCTGGCCGAGCCCCACGCCCGGCCCACGCCAAAGcc > 2:3743495/1‑150 (MQ=255) ccGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCa > 1:1326085/1‑150 (MQ=255) cGCTCCTACACTGGGCTGCGTTAGGCAGAAGATTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCAc < 2:3649515/150‑1 (MQ=255) cGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCAc < 1:4153702/150‑1 (MQ=255) cTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATc < 1:2455557/150‑1 (MQ=255) tACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAGGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCg > 1:932099/1‑150 (MQ=255) gggCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCAcgc < 2:1459060/150‑1 (MQ=255) gggCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCAcgc < 2:4205836/150‑1 (MQ=255) gCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGAt > 1:2138123/1‑140 (MQ=255) gCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACgcgc > 2:5252053/1‑150 (MQ=255) cTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCt < 2:2469327/150‑1 (MQ=255) tGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCtt > 2:924826/1‑150 (MQ=255) tGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCtt > 2:4665796/1‑150 (MQ=255) ttAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAg < 1:622786/150‑1 (MQ=255) aGGCAGACGCTTATTTTCGGCAG‑AAAAAAAAGCGGCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCt < 2:4069355/150‑1 (MQ=255) aGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCt < 1:5100817/150‑1 (MQ=255) aGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTAc < 2:4463619/84‑1 (MQ=255) aGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCa > 1:1536998/1‑150 (MQ=255) aGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCa > 1:1930481/1‑150 (MQ=255) aaGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCaaa < 1:2562108/117‑1 (MQ=255) aaGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATc < 1:183832/150‑1 (MQ=255) aGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCg < 2:3424068/150‑1 (MQ=255) gCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAg > 1:81767/1‑103 (MQ=255) gCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGa < 1:1082444/150‑1 (MQ=255) gCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGa < 1:1091469/150‑1 (MQ=255) tttCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAgg > 2:2945929/1‑77 (MQ=255) aG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTc < 1:3847239/148‑1 (MQ=255) aG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTc > 2:3847239/1‑148 (MQ=255) g‑AAAAAAATGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTgc > 2:3812393/1‑150 (MQ=255) cctaaacGCGCCCGGCGGCCACCGCCCGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCAc < 1:4972356/101‑1 (MQ=37) cctaaaaGCGCCCGGCGGCCACCGCCCGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCAc > 2:4972211/4‑104 (MQ=37) taaaaGCGCCCGGCGGCCACCGCCCGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTgcagca > 1:3679501/2‑150 (MQ=255) aaaGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTgcagcagc < 2:2623729/150‑1 (MQ=255) ggTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTg < 2:521642/150‑1 (MQ=255) ggTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTg < 2:521808/150‑1 (MQ=255) tGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTgga < 2:457793/150‑1 (MQ=255) tGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTgga < 1:4971317/150‑1 (MQ=255) tGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTgga < 2:4273967/150‑1 (MQ=255) ggCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTggag < 1:4259955/150‑1 (MQ=255) ggCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTACAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTggag < 1:3814113/150‑1 (MQ=255) gccgccGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTggagg > 1:4195680/1‑150 (MQ=255) gccgGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTGGAGGaca > 2:5190175/1‑150 (MQ=255) gccgGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTGGAGGaca > 2:3241792/1‑150 (MQ=255) gccgGGCGCTGTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTGGAGGaca > 2:5327220/1‑150 (MQ=255) | GTCGGTGGAGCGGGTGAGGCTGCGAAGAAGGAGACGCGATGGGTGGCACCGGCTTTGCCGGTGTTCGCGGGTGAACCCGCTCCTACAATGGGCTGCGTTAGGCAGAAGCTTATTTTCGGCAG‑AAAAAAAAGCGCCGGGCGGTGGCCGCCGGGCGCTTTTAGGGGCTGACTGGGATCAGTCGCGGTACAGGATGGCCGAGCCCCACGACAGGCCCACGCCAAAGCCACTGATCGCCACGCGCTTCCAGCTGCCATCGAGCATGTGCTTCTGCAGCAGCAGCGGAACACTGGAGGACA > NC_002947/4972429‑4972724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |