| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,973,826 | T→A | 8.1% | intergenic (‑294/+123) | PP_4379 ← / ← flgL | 3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,973,826 | 0 | T | A | 8.1% | 557.0 / 27.4 | 173 | intergenic (‑294/+123) | PP_4379/flgL | 3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL |
| Reads supporting (aligned to +/- strand): ref base T (87/72); new base A (7/7); total (94/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Only 100 of 173 total aligned reads displayed.
GGAAGATGAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCT > NC_002947/4973680‑4973974 | ggAAGATGAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGTGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATcgc > 2:1166870/1‑150 (MQ=255)ggAAGATGAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATcgc > 1:3160333/1‑150 (MQ=255)ggAAGATGAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATcgc > 1:2694973/1‑150 (MQ=255) aGATGAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGc < 1:3752938/150‑1 (MQ=255) aGATGAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGc < 2:585536/150‑1 (MQ=255) aGATGAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGc < 2:3752785/150‑1 (MQ=255) aGATGAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGc < 2:4346844/150‑1 (MQ=255) tGAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCt < 2:5433675/150‑1 (MQ=255) gAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCtt > 1:975935/1‑150 (MQ=255) aGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGAAAGGGCCGCGATGCGGccccat < 2:229302/150‑4 (MQ=255) gCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATAGGGCCGCGATGCGGccccatc < 2:1409600/150‑5 (MQ=255) gCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATAGGGCCGCGATGCGGccccatc < 2:1962140/150‑5 (MQ=255) cGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTcg < 2:653368/150‑1 (MQ=255) tttGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGa > 1:582453/1‑150 (MQ=255) ttGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGAc > 1:1070615/1‑150 (MQ=255) aCTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCa < 2:1656766/150‑1 (MQ=255) aCTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCa > 2:2278779/1‑150 (MQ=255) tCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAg > 2:2840046/1‑150 (MQ=255) tCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAg > 1:3067837/1‑150 (MQ=255) tCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAg > 1:651942/1‑150 (MQ=255) tCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAg < 2:2835076/150‑1 (MQ=255) tCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTc > 1:5112222/1‑150 (MQ=255) cacaTTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTcc < 1:4234792/150‑1 (MQ=255) aaaTGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAAt > 2:1365723/1‑150 (MQ=255) gCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGc < 2:1468002/150‑1 (MQ=255) tACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCa > 1:4912145/1‑150 (MQ=255) tACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCa < 1:1043970/150‑1 (MQ=255) tACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCa < 2:233286/150‑1 (MQ=255) tACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCa < 1:1044017/150‑1 (MQ=255) gAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGc < 2:4720172/145‑1 (MQ=255) aaGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTcc > 2:2417276/1‑150 (MQ=255) ccGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAgg > 1:2397836/1‑150 (MQ=255) ccGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAgg > 2:803591/1‑150 (MQ=255) cGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGga < 2:1292576/150‑1 (MQ=255) gCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGgagaga < 2:4696186/150‑1 (MQ=255) gAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAgg > 2:774546/1‑150 (MQ=255) gAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAgg > 1:4813074/1‑150 (MQ=255) tgtgGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGgacgac < 1:1212272/150‑1 (MQ=255) tgtgGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGgacgac < 1:4713205/150‑1 (MQ=255) tgtgGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGgacgac > 1:1992213/1‑150 (MQ=255) tgGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCt < 2:3106230/150‑1 (MQ=255) ggACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATCATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCtgtg < 2:2041814/150‑1 (MQ=255) aCTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTggg < 1:373115/150‑1 (MQ=255) tGGGGAAGTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTggggg > 2:4536395/1‑150 (MQ=255) ggAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCt < 1:5430739/150‑1 (MQ=255) gAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCtt < 2:4974234/150‑1 (MQ=255) gAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCtt < 2:3700600/150‑1 (MQ=255) gAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCtt < 2:713588/150‑1 (MQ=255) tttGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTtgtg > 2:3966256/1‑150 (MQ=255) cGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTcgc > 1:2240089/1‑150 (MQ=255) cGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTcgc > 2:4225933/1‑150 (MQ=255) aaTGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGAt < 2:3921028/150‑1 (MQ=255) aaTGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGAt > 2:4998413/1‑150 (MQ=255) aaTGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGAt < 1:2537803/150‑1 (MQ=255) tGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAg < 1:3953245/150‑1 (MQ=255) tGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAg > 1:1378252/1‑150 (MQ=255) ccGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTcgc < 1:189889/142‑1 (MQ=255) ccGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTcgc > 2:189921/1‑142 (MQ=255) cgggcgggCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCt < 1:3389021/150‑1 (MQ=255) gggcACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCCAGGCCGCTCCCCCGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCgca < 2:877970/150‑1 (MQ=255) ggcACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCgcag > 1:397741/1‑150 (MQ=255) tGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGcc > 1:3487434/1‑150 (MQ=255) tGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTATCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGAGTCGCGAAAGGGCTGCGCAGCAGcc > 1:3487786/1‑150 (MQ=255) gACCCCGAATGATCAGCTTCGCAGCAGGTATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCtgt < 1:2990857/112‑1 (MQ=255) gACCCCGAATGATCAGCTTCGCAGCAGGTATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCtgt > 2:2990857/1‑112 (MQ=255) cccGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAgg > 1:3320932/1‑150 (MQ=255) aaTGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATca < 1:1452194/150‑1 (MQ=255) gataTCTGCTGCGAAGCTGATATCGATGGGGCCGCATCCCCGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATcag > 2:544074/4‑150 (MQ=255) tGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATcagg < 1:2377986/150‑1 (MQ=255) aTCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATcaggca > 2:5257386/1‑150 (MQ=255) aTCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATcaggca > 1:4598623/1‑150 (MQ=255) tCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATcaggcag > 1:261739/1‑150 (MQ=255) tCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATcaggcag < 1:4412300/150‑1 (MQ=255) cAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATcaggcagg > 2:3875102/1‑150 (MQ=255) aGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGccc > 2:3659413/1‑135 (MQ=255) aGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGccc < 1:3659413/135‑1 (MQ=255) aGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCaggcaggc > 1:5042785/1‑150 (MQ=255) cTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGgcaggcag > 2:3721996/1‑150 (MQ=255) tCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGAt < 1:4744606/150‑1 (MQ=255) tCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGAt < 1:4536395/150‑1 (MQ=255) gcagcaGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTa < 1:5257386/150‑1 (MQ=255) agcagATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGa > 1:1310935/1‑150 (MQ=255) agcagATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGa > 2:4661793/1‑150 (MQ=255) agcagATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGa > 1:4632632/1‑150 (MQ=255) agATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCt > 2:3026422/1‑150 (MQ=255) atatCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTg < 2:3160333/150‑1 (MQ=255) atCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTc > 2:1374069/1‑150 (MQ=255) gaaagggCCGCGATGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCtt > 1:4291642/5‑144 (MQ=255) gaaagggCCGCGATGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGaa > 1:697820/5‑150 (MQ=255) gATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTgcgc > 1:5424865/1‑109 (MQ=255) gATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGaa > 1:2897919/1‑150 (MQ=255) aagggCCGCGATGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACa > 1:185757/3‑150 (MQ=255) ggggCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGGCGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAg > 2:1513043/1‑150 (MQ=255) agggCCGCGATGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGgagaga > 2:1689606/2‑66 (MQ=21) agggCCGCGATGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAg > 2:138382/2‑150 (MQ=255) ggCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGc > 2:4392609/1‑150 (MQ=255) gCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGa < 2:4857403/92‑1 (MQ=255) gCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCt > 2:3477684/1‑150 (MQ=255) ccGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCtt > 1:4123304/1‑150 (MQ=255) gCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAg < 2:5112222/150‑1 (MQ=255) | GGAAGATGAGCGTTTTGACTCATTGGTCACATTGAAATGCTACGAAAGCCGTGGCGAGGGTGTGGGGACTGGGGAATTTGCGGAATGACCGGGCGGGCACTGGACCCCGAATGATCAGCTTCGCAGCAGATATCGATGGGGCCGCATCGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACGAATACGCCACCTCCAGGAGAGAGGACGACCTGTGGGGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCAGGATCAGGCAGGCAGATTAGATCTTGTCGAACAGGCTTAGCT > NC_002947/4973680‑4973974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |