| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,022,776 | T→C | 6.8% | intergenic (+25/+26) | PP_4424 → / ← PP_4425 | HTH‑type transcriptional regulator/amino acid ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,022,776 | 0 | T | C | 6.8% | 643.3 / 22.7 | 206 | intergenic (+25/+26) | PP_4424/PP_4425 | HTH‑type transcriptional regulator/amino acid ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (108/84); new base C (5/9); total (113/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.70e-01 | |||||||||||
Only 100 of 206 total aligned reads displayed.
GGAGGACTACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCAAACGCGATC > NC_002947/5022628‑5022924 | ggaggaCTACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTa > 1:2896348/1‑150 (MQ=255)ggaggaCTACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTa > 1:5285333/1‑150 (MQ=255) gaggaCTACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTAc > 1:1966526/1‑150 (MQ=255) tACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGa > 2:3965682/1‑150 (MQ=255) cGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAag > 1:3783331/1‑150 (MQ=255) cGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAag < 2:1279153/150‑1 (MQ=255) cGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAag > 2:4871402/1‑150 (MQ=255) gagaACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGTAGCCCTCCTGAaga < 1:1379301/150‑1 (MQ=255) gagaACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAaga < 2:3659008/150‑1 (MQ=255) ttCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGGTCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAaga < 1:4893804/144‑1 (MQ=255) ttCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGc > 1:2667953/1‑150 (MQ=255) ttCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGc > 1:2699518/1‑150 (MQ=255) ttCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCAACTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGc > 2:1389774/1‑150 (MQ=255) ttCACCCGAAGGTTCGTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGc > 2:4226142/1‑150 (MQ=255) ccGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGaaa > 1:1860873/1‑150 (MQ=255) ccGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGaaa > 1:3619903/1‑150 (MQ=255) ccGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGaaa > 1:1809405/1‑150 (MQ=255) ccGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGaaa > 2:5042835/1‑150 (MQ=255) cGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTAGCTCTTCAGGAGTAGCCCTCCTGAaga < 1:1076033/138‑1 (MQ=255) aaGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATcc > 2:1522170/1‑150 (MQ=255) ggTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCtt > 2:2277415/1‑150 (MQ=255) tcttctACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAAt < 1:1036264/150‑1 (MQ=255) ttctACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAAttt > 1:4846603/1‑150 (MQ=255) tACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGcc < 1:3541826/150‑1 (MQ=255) aCGAAAACAATGACATCAAGACTTACAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCct < 1:147240/150‑1 (MQ=255) aaaaCAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCctctc < 2:2896348/150‑1 (MQ=255) aaTGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGTAGCCCTCCTGAaga < 1:3795452/117‑1 (MQ=255) aaTGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGTAGCACTCCTGAaga > 2:3795452/1‑117 (MQ=255) aaTGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACg < 1:3143751/150‑1 (MQ=255) aaTGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACg > 2:3327061/1‑150 (MQ=255) tGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCctctcagctggc > 1:5167957/1‑143 (MQ=255) tGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACATCCAATTGATGATGCTAAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGgc > 2:532399/1‑150 (MQ=255) aTCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAGGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTc > 2:4669690/1‑150 (MQ=255) gTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAAc < 1:4475218/150‑1 (MQ=255) ttCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTg > 1:3523843/1‑150 (MQ=255) cAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCg > 2:1692009/1‑150 (MQ=255) aaaaCAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGTAGCCCTCCTGAaga > 2:238511/1‑99 (MQ=38) aaaaCAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGTAGCCCTCCTGAaga < 1:238511/99‑1 (MQ=38) ctGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGc < 1:2759837/149‑1 (MQ=255) gTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGctct > 1:224012/1‑150 (MQ=255) gTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTcc < 2:4134887/150‑1 (MQ=255) tGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCt > 2:3669039/1‑150 (MQ=255) gATGGATCGGGTGTAGGCCGGATTCACTCTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGTAATCCTTAATTTGCCTCTCTATCGGCGCTCTGTATAGTGGGGGTGCGCTCTTCCTg > 2:2514653/1‑150 (MQ=255) aTGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTgg < 2:4020419/150‑1 (MQ=255) gATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTggggg < 1:2443999/150‑1 (MQ=255) aTCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTgggggg > 2:1341122/1‑150 (MQ=255) tCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTAAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGACATCCTGAATGAGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTCCGCTCTGCCTggggggg > 2:5245177/1‑149 (MQ=255) gggTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTggggg < 2:3452707/146‑1 (MQ=255) gggTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTggggg > 1:3452707/1‑146 (MQ=255) aGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACa < 1:2858643/150‑1 (MQ=255) gCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGc < 2:1786107/126‑1 (MQ=255) cGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTg < 2:3246624/150‑1 (MQ=255) cGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTg < 2:1115779/150‑1 (MQ=255) gagtCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGc < 2:849877/147‑1 (MQ=255) tCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAACTCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTg > 2:1051317/1‑150 (MQ=255) tCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTg > 2:1899997/1‑150 (MQ=255) acacTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGACAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGa > 1:499601/1‑150 (MQ=255) acacTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGa > 1:3007083/1‑150 (MQ=255) acacTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGa < 2:2699518/150‑1 (MQ=255) acacTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGa > 2:2110245/1‑150 (MQ=255) acTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTTCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGc > 1:4280676/1‑150 (MQ=255) ttCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCAc > 1:1781376/1‑150 (MQ=255) ttCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCAc > 1:4336864/1‑150 (MQ=255) aaTTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTg > 2:2069887/1‑150 (MQ=255) gatgatGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCa < 1:1267807/150‑1 (MQ=255) atgatgCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCAt < 2:5181993/150‑1 (MQ=255) tgatgCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATg > 1:149150/1‑150 (MQ=255) gatgCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGa < 1:840864/150‑1 (MQ=255) gatgCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGa > 1:739809/1‑150 (MQ=255) gatgCTTAGCACCTCTTAGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGa > 2:3232626/1‑150 (MQ=255) cTTAGCACCTCTTGGCTCTTCAGGAGGTCTACTCCTGAAGAGCTATCAGAAATCCTTAATTTGCCTCTCTATCGGCGCTCAGAAAACTGCGGGTACTCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTc < 1:4019260/150‑1 (MQ=255) cTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTc < 1:5327848/150‑1 (MQ=255) tAGCAACTCTTGGCTCTTCATGAGGGCTACTCCTTAAGAGCTAGCACAAATCCTTAAATTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCCAACACATGGCCTGGAGCACCTGGTTCATGaaataga > 2:4255285/1‑145 (MQ=255) aGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTTCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGAc < 2:4280676/150‑1 (MQ=255) cACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTGGTTCATGAATTCGAccc > 1:5363499/1‑150 (MQ=255) ccTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCtt < 1:927279/150‑1 (MQ=255) ctctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTg < 1:3005257/150‑1 (MQ=255) ctctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTg < 1:2557483/150‑1 (MQ=255) ctctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTg > 2:2234095/1‑150 (MQ=255) ctctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTg > 2:1988783/1‑150 (MQ=255) gctagCTCTTCAGGAGTAGCCCTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGa < 2:3161680/132‑1 (MQ=39) ctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTa < 1:4572888/150‑1 (MQ=255) ctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTa < 1:2286798/150‑1 (MQ=255) ctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTa < 1:5244518/150‑1 (MQ=255) tGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTaga < 2:3501242/150‑1 (MQ=255) ctctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTagaaga < 2:5285333/150‑1 (MQ=255) ctctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTagaaga < 1:2869712/150‑1 (MQ=255) tctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAgaagaa > 1:2609367/1‑150 (MQ=255) tctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAgaagaa > 1:3293257/1‑150 (MQ=255) tctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAgaagaa < 1:4062403/150‑1 (MQ=255) tctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAgaagaa < 1:5373008/150‑1 (MQ=255) tctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAgaagaa < 1:505268/150‑1 (MQ=255) actTCAGGAGGGATACTCCAGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAgaagaa < 2:4919145/149‑1 (MQ=255) ctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGaagaag < 1:1008272/150‑1 (MQ=255) ctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGaagaag > 2:1195385/1‑150 (MQ=255) aggaggGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCaaa > 1:3176796/1‑150 (MQ=255) aggaggGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCaaa < 2:263276/150‑1 (MQ=255) aggaggGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCaaa < 2:174863/150‑1 (MQ=255) ggCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCAAACGCGa > 2:1610942/1‑150 (MQ=255) ggCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCAAACGCGa > 2:756134/1‑150 (MQ=255) | GGAGGACTACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCAAACGCGATC > NC_002947/5022628‑5022924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |