| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,022,777 | A→C | 6.4% | intergenic (+26/+25) | PP_4424 → / ← PP_4425 | HTH‑type transcriptional regulator/amino acid ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,022,777 | 0 | A | C | 6.4% | 653.7 / 21.0 | 202 | intergenic (+26/+25) | PP_4424/PP_4425 | HTH‑type transcriptional regulator/amino acid ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (104/84); new base C (5/9); total (109/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 208 total aligned reads displayed.
GGAGGACTACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCAAACGCGATCCG > NC_002947/5022628‑5022926 | ggaggaCTACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTa > 1:2896348/1‑150 (MQ=255) gaggaCTACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTAc > 1:1966526/1‑150 (MQ=255) cTACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTg > 1:3794914/1‑150 (MQ=255) tACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCTCCTCTTGGCTCTTCAGGAGGGCTACTCCTGa > 1:4919145/1‑150 (MQ=255) tACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGa > 1:3564797/1‑150 (MQ=255) cGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATGAAGAGTTTCATAACACTGTTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTTGCACCTCTTTGCTCTTCAGTAGGGCTACTCCTGAag < 2:1279213/150‑1 (MQ=255) cGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAag > 1:3778874/1‑150 (MQ=255) cGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAag > 2:4871402/1‑150 (MQ=255) gagaACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACACTGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGTAGCCCTCCTGAaga < 1:908990/150‑1 (MQ=255) gagaACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGTAGCCCTCCTGAaga < 1:1379301/150‑1 (MQ=255) gagaACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAaga > 1:384244/1‑150 (MQ=255) gagaACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAaga < 2:3659008/150‑1 (MQ=255) gagaACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAaga < 1:44813/150‑1 (MQ=255) gaACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGc > 1:5115490/1‑150 (MQ=255) cTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTAGCTCTTCAGGAGTAGCCCTCCTGAAGAGccaa < 2:3983085/150‑4 (MQ=255) ttCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGc > 2:4226131/1‑150 (MQ=255) ttCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGc > 1:2699518/1‑150 (MQ=255) ttCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGc > 1:2667953/1‑150 (MQ=255) tCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCa < 2:2083335/150‑1 (MQ=255) ccGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGaaa > 1:1860873/1‑150 (MQ=255) ccGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGaaa > 1:1809405/1‑150 (MQ=255) ccGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGaaa > 2:5042835/1‑150 (MQ=255) ccGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGaaa > 1:5181993/1‑150 (MQ=255) ccGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGaaa > 2:2286798/1‑150 (MQ=255) ccGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGaaa > 2:2469573/1‑150 (MQ=255) cGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTAGCTCTTCAGGAGTAGCCCTCCTGAaga > 2:1076033/1‑138 (MQ=255) cGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTAGCTCTTCAGGAGTAGCCCTCCTGAaga < 1:1076033/138‑1 (MQ=255) ggTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCtt > 2:2277356/1‑150 (MQ=255) tcttctACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAAt < 1:1036264/150‑1 (MQ=255) ttctACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAAttt > 2:2146786/1‑150 (MQ=255) aCGAAAACAATGACATCAAGACTTACAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCct < 1:147240/150‑1 (MQ=255) aaTGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGTAGCACTCCTGAaga > 2:3795452/1‑117 (MQ=255) aaTGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACg > 1:3205475/1‑150 (MQ=255) aaTGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACg > 2:3327061/1‑150 (MQ=255) tGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGgc < 1:5357360/150‑1 (MQ=255) tGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACATCCAATTGATGATGCTAAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGgc > 2:532399/1‑150 (MQ=255) aCATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGgcgc > 1:4999471/1‑150 (MQ=255) aTCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAGGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTc > 2:4669690/1‑150 (MQ=255) aTCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTc > 2:172630/1‑150 (MQ=255) tCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAagag < 2:1036505/111‑1 (MQ=255) tCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCa > 1:3388760/1‑150 (MQ=255) cAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAg > 2:1660987/1‑150 (MQ=255) gagTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGAACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGaaa > 1:4836184/1‑150 (MQ=255) agTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGaaaa > 2:1121840/1‑150 (MQ=255) ctGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGc < 1:2759837/149‑1 (MQ=255) aTGGTCGTGATTGATCGGGTAAAGGCCGGATTCACACTGCCACTTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTATCGGCGCTCAGAAAACTGCGGGTACGc < 2:3843928/150‑1 (MQ=255) gTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGctct > 1:224012/1‑150 (MQ=255) tGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCt > 2:3669039/1‑150 (MQ=255) tGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTggg < 1:5263249/150‑1 (MQ=255) tCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTAAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGACATCCTGAATGAGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTCCGCTCTGCCTggggggg > 2:5245177/1‑149 (MQ=255) gggTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTggggg < 2:3452707/146‑1 (MQ=255) aaaGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGaa > 1:732773/1‑150 (MQ=255) aaaGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGaa > 1:2585204/1‑150 (MQ=255) aGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACa < 1:2858643/150‑1 (MQ=255) gCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGc < 2:1786107/126‑1 (MQ=255) cGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTg < 2:3246624/150‑1 (MQ=255) ggATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTgg > 2:137341/1‑150 (MQ=255) gagtCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGc < 2:849877/147‑1 (MQ=255) tCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTg < 1:4431430/150‑1 (MQ=255) tCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTg > 2:1899997/1‑150 (MQ=255) acacTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGa < 1:4871402/150‑1 (MQ=255) acacTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGa < 2:4047797/150‑1 (MQ=255) acacTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGa > 1:3007083/1‑150 (MQ=255) acTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTTCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGc > 1:4280676/1‑150 (MQ=255) acTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGc > 1:24324/1‑150 (MQ=255) ttCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCAc > 1:1781376/1‑150 (MQ=255) ttCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCAc > 2:2698019/1‑150 (MQ=255) cAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCtt < 2:1569423/150‑1 (MQ=255) aaTTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTg > 2:2069887/1‑150 (MQ=255) gatgatGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCa < 1:1267807/150‑1 (MQ=255) atgatgCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCAt < 2:5181993/150‑1 (MQ=255) tgatgCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATg > 1:149150/1‑150 (MQ=255) gatgCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGa > 1:740385/1‑150 (MQ=255) gatgCTTAGCACCTCTTAGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGa > 2:3232626/1‑150 (MQ=255) gCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAAtt < 2:1275246/150‑1 (MQ=255) cTTAGCACCTCTTGGCTCTTCAGGAGGTCTACTCCTGAAGAGCTATCAGAAATCCTTAATTTGCCTCTCTATCGGCGCTCAGAAAACTGCGGGTACTCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTc < 1:4019260/150‑1 (MQ=255) cTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTc < 1:2631302/150‑1 (MQ=255) tAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGa > 2:1414569/1‑150 (MQ=255) tAGCAACTCTTGGCTCTTCATGAGGGCTACTCCTTAAGAGCTAGCACAAATCCTTAAATTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCCAACACATGGCCTGGAGCACCTGGTTCATGaaataga > 2:4255285/1‑145 (MQ=255) aGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTTCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGAc < 2:4280676/150‑1 (MQ=255) aGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGtct < 1:3494903/111‑1 (MQ=255) gCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGAcc < 1:5372856/150‑1 (MQ=255) cACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGAccc < 1:2469573/150‑1 (MQ=255) ccTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCtt < 1:3525559/150‑1 (MQ=255) ctctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTg < 2:279949/150‑1 (MQ=255) ctctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTg > 2:1988783/1‑150 (MQ=255) ctctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTg < 1:3005257/150‑1 (MQ=255) gctagCTCTTCAGGAGTAGCCCTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGa < 2:3161680/132‑1 (MQ=39) gctagCTCTTCAGGAGTAGCCCTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGa > 1:3161680/5‑136 (MQ=39) ctTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTa < 1:2286798/150‑1 (MQ=255) tGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTaga < 2:3501242/150‑1 (MQ=255) ctctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTagaaga < 1:2869712/150‑1 (MQ=255) ctctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTagaaga < 2:5285333/150‑1 (MQ=255) tctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAgaagaa < 1:4062403/150‑1 (MQ=255) actTCAGGAGGGATACTCCAGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAgaagaa < 2:4919145/149‑1 (MQ=255) ctTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGaagaag < 1:1008272/150‑1 (MQ=255) tCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCa > 2:2552230/1‑150 (MQ=255) ggCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCAAACGCGa > 2:756134/1‑150 (MQ=255) cTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCAAACGCGATc < 1:5306950/150‑1 (MQ=255) aCTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCAAACGCGATCCg > 1:34137/1‑150 (MQ=255) | GGAGGACTACGAGAACTTCACCCGAAGGTTCTTCTACGAAAACAATGACATCAAGAGTTTCAAAACAATGGTCGTGATGGATCGGGTAAAGGCCGGATTCACACTTCCAATTGATGATGCTTAGCACCTCTTGGCTCTTCAGGAGGGCTACTCCTGAAGAGCTAGCAGAAATCCTTAATTTGCCTCTCTAACGGCGCTCAGAAAACTGCGGGTACGCTCTTCCTGGGGGGTCTCGAACAGTTGGCCTGGAGCACCTTGTTCATGAATTCGACCCTTGTAGAAGAAGCAAACGCGATCCG > NC_002947/5022628‑5022926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |