| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,101,905 | T→G | 14.6% | intergenic (+21/+132) | PP_4488 → / ← phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,101,905 | 0 | T | G | 14.6% | 186.9 / 6.8 | 82 | intergenic (+21/+132) | PP_4488/phhR | hypothetical protein/sigma‑54 dependent transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (14/53); new base G (10/4); total (25/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.67e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTTATTTCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCC > NC_002947/5101756‑5102046 | gTTATTTCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCt < 2:4780068/150‑1 (MQ=255)gTTATTTCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCt < 2:4779989/150‑1 (MQ=255) ttCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCggg < 2:3415532/150‑1 (MQ=255) cATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGccc < 2:3359235/150‑1 (MQ=255) cATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGccc > 1:4801417/1‑150 (MQ=255) cATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGccc > 2:3773655/1‑150 (MQ=255) cATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGccc < 1:3908732/150‑1 (MQ=255) cATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGccc < 2:4127454/150‑1 (MQ=255) aTGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGcccc > 2:187113/1‑150 (MQ=255) tGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCt > 2:4160889/1‑150 (MQ=255) tGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGCAGGGccccc < 2:2381230/150‑2 (MQ=255) aGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTAt > 2:5233421/1‑150 (MQ=255) aGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTAt < 1:5233421/150‑1 (MQ=255) aaGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCTATcgcg > 2:2744865/1‑150 (MQ=255) gTGCCCCCTGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGACTACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGac < 2:4261307/150‑1 (MQ=255) gTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGACTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGac < 1:1021909/150‑1 (MQ=255) tGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGGCCGGCGGGCCCCAATcgcgccc > 1:1363270/1‑147 (MQ=255) ccAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACaa < 1:5261470/150‑1 (MQ=255) ccAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGACCCTGCGGGCCCCTATCGCGACACaa < 2:2786296/150‑1 (MQ=255) cAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATAGCTTGGAATCGGGGGCCCTGCGGGGCCCTATCGGGAgacatg > 2:3273705/1‑148 (MQ=255) aTGTGTGCGAAGTCGTGCCGGCCCTCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGTCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGc < 1:252502/150‑1 (MQ=255) aTGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGc < 2:4750571/150‑1 (MQ=255) tgCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGGAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑c < 2:4183753/150‑1 (MQ=255) tgCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑c < 1:4717602/150‑1 (MQ=255) tgCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑c < 2:4653608/150‑1 (MQ=255) cGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑ccc < 1:4395497/150‑1 (MQ=255) gAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCAGCGGGCCCCAATAGCGACACAACGCCGCA‑CCca > 2:3646098/1‑150 (MQ=255) cGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGAt < 2:1336991/150‑1 (MQ=255) gCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAAt < 1:4501796/150‑1 (MQ=255) gCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAAt < 1:4389820/150‑1 (MQ=255) ggCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATgct < 2:3107335/150‑2 (MQ=255) gCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATgcgc < 2:2438640/150‑1 (MQ=255) ccGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCCCAGATAATGCGCTc > 2:1754370/1‑150 (MQ=255) ccGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCAATCGCGACACAAGGCCGCT‑CCCAAAGATAATGCGCTc > 2:2571354/1‑150 (MQ=255) cGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCa < 2:2311545/150‑1 (MQ=255) cGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCa < 2:1946945/150‑1 (MQ=255) cATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGc < 1:660513/150‑1 (MQ=255) gACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCag < 2:1127048/150‑1 (MQ=255) gACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCag < 2:2604005/150‑1 (MQ=255) aCCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCaga < 1:3434457/150‑1 (MQ=255) aCCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCaga < 2:2303397/150‑1 (MQ=255) aCCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCaga < 1:508728/150‑1 (MQ=255) ccTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCagag < 1:2940017/150‑1 (MQ=255) cTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCGATCGCGACACAAGGCCCCA‑CCCACACATAAATCGCTCAGCCAGAGc > 2:156928/1‑150 (MQ=255) tACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGca < 1:4368441/150‑1 (MQ=255) cGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCTGGCTGAGcgca < 1:1058864/150‑1 (MQ=255) ggACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCg < 2:3082223/150‑1 (MQ=255) cTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTAt < 1:908231/150‑1 (MQ=255) cTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTAt < 1:3185599/150‑1 (MQ=255) tCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑ccc > 2:898186/1‑116 (MQ=255) tCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑ccc < 1:898186/116‑1 (MQ=255) tCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACCCATAATGCGCTCAGCCACAGCACAGCGTAtt > 2:687515/1‑150 (MQ=255) ccAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTAc > 2:5409261/1‑150 (MQ=255) ccAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAACACAGCGTATTAc < 2:1329935/150‑1 (MQ=255) cAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCGATCGCGACACAACGCCGCG‑CCCCCAGATAAAGCGCGCAGCCAGAGCCCAGCGGATTAcc > 1:2190812/1‑150 (MQ=255) ccAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCtgtg < 2:402928/150‑1 (MQ=255) ccAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCtgtg < 2:3131865/150‑1 (MQ=255) aGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGa < 1:2907634/150‑1 (MQ=255) aGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGa < 1:735290/150‑1 (MQ=255) gCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCAATCGCGCCACAAGGCCGCT‑CCCACAGATAAAGCGCTCAGCCAGAGCCCAGCGGAGTACCTGTGGGAGCgg > 1:4084170/1‑150 (MQ=255) aTTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCtt < 1:3646098/150‑1 (MQ=255) ttCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCAATCGCGACACAAGGCCGCA‑CCCACACAAAAATCGCTCACCCCCAGCACAACGGATTACCAGTGGGAGCCGCCGtg > 1:3617735/1‑150 (MQ=255) tctcGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTtgt < 2:2483914/150‑1 (MQ=255) tcGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGCCACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTgtgt < 1:2738875/150‑1 (MQ=255) tcGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTCTTACCTGTGGGAGCGGCCTTgtgt > 2:3076612/1‑150 (MQ=255) tcGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTgtgt > 2:4489245/1‑150 (MQ=255) cGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTc < 2:1629254/150‑1 (MQ=255) ccGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTATCTGTGGGAGCGGCCTTGTGTCGCGata < 1:3061484/150‑3 (MQ=17) gTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATAGCCGCACAAGGCCCCA‑CCCACAGATAATTCGCACAGCCCGAGCACAGCGGATTAACAGTGGGGGCGGCCATGTGTCGCGTAAgggc > 2:1414952/1‑148 (MQ=255) ggggAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAAATCGCACAGCCAGAGCACACCGTATTAACGGTGGGAGCGGCCTTGTGTAGCGGAAGGACAGCaa > 2:618416/1‑150 (MQ=255) gctCCAACGGCTGATACCTTGGAATGGGGGGCCCTGCGGGCCCCTATCGCGACCCACGGCCGCT‑CCCACATATAATGCGCTCAGCCAGAGAACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAg < 1:5278664/150‑1 (MQ=39) cccccACCGGCTGATACTTTGGACTGGGGGCCCGGGCGGGCCCCTATCGCGCCACACGGCCGCC‑CCCACAGATATGGCGCTCCCCCAGCGAACAGCTTATTACCTGGGGGAGGGGCCTTGTCTCGCGAAAGGACTGCAACGCAGTCCCAg < 1:2744865/147‑1 (MQ=255) ctCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCGTTGCAGTcctttc < 2:295571/150‑5 (MQ=255) ctCCAACGGCTGATACCTTGGAATCGGGGGCCCGGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGCAAGGACTGCAACGCAGTCCCAgg > 2:3098216/1‑150 (MQ=255) tCCAACGGCTGATACCGTGGAATCGGGGGCCCGGCGGGCCCCGATCGCGACACAAGGCCGCT‑CCCACAGCAAATGCGCACAGCCCCAGCACAGCGGATTACCGGGGGGAGCGGCCGGGTGTCGCGAAAGGACTGCAACGCCGTCCCCggg > 2:825410/1‑149 (MQ=255) gCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGa < 2:5390807/150‑1 (MQ=255) aTACCTTGTAAGGGGGGGCCCGGCGGGCCCCTACCGCGCCCCCCGCCCCCG‑CCCAAATATAAGGCGCTCCGCCAGAGCACAGCTTTTTACGTGTGGGAGGGGCGTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaa < 1:987564/150‑1 (MQ=255) ttGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCACAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACt < 2:311736/150‑1 (MQ=255) ttGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑ACCACAGATAATTCGCTCAGCCAGAGCACAGCGTATTAACTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACcaacaaat > 2:5393049/1‑148 (MQ=255) gcattggggggCCCGGGGGGCCCCTTTCGCGCCACACGGCCGCT‑CCCACATATAATGCGCTCAGCCTGCGCACAGGTTTTTACCTGTGGGTGGGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTaa < 1:528585/144‑1 (MQ=255) atggggggCCCTGCGGGCCCCTATCGCGACACCAGGCCGAT‑CCCACATATAATGCGCACCGCCAGAGCACAGCGTATTACGTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATcc < 1:4160889/147‑1 (MQ=255) aTCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATcc < 2:3128046/150‑1 (MQ=255) gggggCCCTGCGGGCCCCTATCGCGACACACGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACCGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATccgcc < 2:262494/150‑1 (MQ=255) gggggCCCTGCGGGCCCCTATCGCGACACACGGCCGCT‑CCAACAGAAAATGCGCTCAGCCAGAGCACAGCTTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATccgcc < 1:1231632/150‑1 (MQ=255) | GTTATTTCCATGAGCGAAGTGCCCAATGTGTGCGAAGTCGTGCCGGCCCGCATGACCTACGAGGACTCCCAGGGCCAGAAGCACATTCTCGAATACCGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCT‑CCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCC > NC_002947/5101756‑5102046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |