| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,557,574 | T→A | 7.7% | intergenic (‑80/+94) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,557,574 | 0 | T | A | 7.7% | 330.9 / 8.2 | 127 | intergenic (‑80/+94) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| Reads supporting (aligned to +/- strand): ref base T (48/66); new base A (8/3); total (57/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.24e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 127 total aligned reads displayed.
CGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGC > NC_002947/5557427‑5557722 | tACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCg > 2:5263744/1‑150 (MQ=255) tACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCg > 2:273862/1‑150 (MQ=255) cTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTTTGTGGCGCAAGGGGCCCATAGCGGccc > 1:3331482/1‑150 (MQ=255) cTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGccc > 1:2916402/1‑150 (MQ=255) tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGcccc > 1:903960/1‑150 (MQ=255) tCACTGTGCTGGATATTGAGGTCGGGCTGGGCAGCGATTAGTCGGGCGGACATGAGCATCTCCTTTTGTCTTGTGTCGCCGACAGCATAGCAAGAGCGCTCTGGTGTGGGAGCGGGCTTGTGACGCGTAAGGGCCGCTATGCGGcccttt < 1:613082/150‑4 (MQ=255) aCTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCCCCTAGCGGCCCCGGcc > 1:3135061/1‑149 (MQ=255) cTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCCTAGCGGCCCCCGCaa > 1:1774017/1‑150 (MQ=255) gCAGGAAATTCAGGTCGGCCTGGGCAGCTATTAGTCGGGCGGAAATGAGAAACTCCTTTTGTCATGTGTCGCCTACAGAATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTc < 1:3384967/150‑1 (MQ=38) ctggAAATTCTGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGAAACTCCTTTTGTCTTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGTAGCGGCCTTGTGTCGCTAAAGGGCCGCATAGCGGCCCCGGCAATTTcc < 1:1641760/148‑1 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGGAAGGGCCGCATAGCGGCCCCGGCAATTTcc > 1:4979245/1‑150 (MQ=255) ggAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGGAAGGGCCCCATAGCGGCCCCGGCCAATTAcgc > 2:2313984/1‑150 (MQ=39) ggAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCcgc < 1:4811252/150‑1 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCcg > 1:1823428/1‑148 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCcg < 2:1823428/148‑1 (MQ=255) aTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCcgc < 2:2109219/146‑1 (MQ=255) tCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAAGTTCCGCGTGTAt > 2:4860289/1‑150 (MQ=255) cAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATg < 1:4905974/150‑1 (MQ=255) gTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGcaa < 1:2145506/150‑1 (MQ=255) gTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGcaa < 1:2145852/150‑1 (MQ=255) tGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCt < 2:2916402/150‑1 (MQ=255) ggCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTgg < 1:4862322/150‑1 (MQ=255) gCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTggg < 2:3571818/150‑1 (MQ=255) gCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGgct < 1:751543/150‑1 (MQ=255) cGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGgctg < 1:1758528/150‑1 (MQ=255) cGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGgctg > 1:4626498/1‑150 (MQ=255) gATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGgctgc > 2:5419660/1‑150 (MQ=255) gATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAAGTTCCGCGGGGTTGCAACAAACCAGGGgctgc > 1:3131722/1‑150 (MQ=38) aTTAGTCGGGCGGAAATTAGAAACTCCTTTTTTCTTGTGTCGCCGACAGCATAGCAACACCGCTCTGGTGTGGGTGCGGCCTTGTGTCGCGAATGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGgctgct < 1:2427009/150‑1 (MQ=38) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAGGGCCCCATAGCGGCCCCGCCCATTACCGCGGGTATGCCACAAAACTGGGGCTGCTATGc > 2:4749641/1‑150 (MQ=38) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGc < 2:502237/150‑1 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGc < 2:4626498/150‑1 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAAACTGGGGCTGCTATGc > 2:2120219/1‑150 (MQ=255) tCGGGGGGACATGCGCACCTCCTTTTGTCATGTGTCGCCGACAGCATCGCAACACCGCGCTGGTGTGGGAGCGGCCTTGTGTCGCGAACGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCa < 1:1509162/150‑1 (MQ=38) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCCTAGCGGCCCCCGCAAATTCCGCGTGTATGCAACAAACCAGGGGCTGCGATGcc > 2:4270856/1‑149 (MQ=39) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGc > 1:4038464/1‑101 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGc < 2:4038464/101‑1 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCa < 2:4600921/150‑1 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCa < 2:2504482/150‑1 (MQ=255) gggCGGACATGAGCAACTCCTTTTGTCATGTGGCGCCGACAGCATCGCAACACCGCTCAGGGGGGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGc < 1:4568205/150‑1 (MQ=255) cGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCTGGTGTGGGAGCGGCCTTGTGTCGCTAAAGGGCCGCATCGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCATAGCAGcccc < 1:2769658/150‑2 (MQ=38) cGGACATGAGAAACTCCTTTTGTCTTGTGTCGCCGACAGCATAGAAACACCGCTCCGGTGTGGGAGCGGCCTTGTGTCGCGAATGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCt < 1:936380/150‑1 (MQ=38) aCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTc < 2:903960/150‑1 (MQ=255) aCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTc < 1:546244/150‑1 (MQ=255) aCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTc < 2:335708/150‑1 (MQ=255) aCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCATGGGCTGCTATGCAGCCCATTc > 2:3852277/1‑150 (MQ=255) aTGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTcg‑c < 1:4645597/150‑1 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGCAAGGGCCCCCTAGCGGCCCCCGCCAATTACGCGGGGATGCAACAAAACAGGGGCTGCGATGCAGCCCATTCG‑CGa > 2:2959140/1‑150 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGa < 1:1889608/150‑1 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGa < 1:1889554/150‑1 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCCGCAATTTACGCGGGTATGCAACAAAACTGGGGCTGCTATGCAGCCCGTTCG‑CGa > 2:4189756/1‑150 (MQ=38) gCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCACCACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGaca < 1:115427/150‑1 (MQ=255) gCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGaca < 1:4065702/150‑1 (MQ=255) aaCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAAATTCCGCGTGTATGCAACAAACCAGGGGCTGCTATGCAGCCCATTCG‑CGAcaca > 2:865718/1‑150 (MQ=255) aCTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGGAAAGGCCGCAAAGCGGCCCCCGCACGTTACGCCGGTAATCAACAAACCTGGGGCAGCTATTCACCCCATTAG‑CGACACaa > 1:4930718/1‑150 (MQ=25) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTGGCGCAATGGGCGCCTATCGGCCCCCGCCAATTCCGCGGGGTTGCAACAAACCTGGGGCTGCGATGCAGCCCTTTGG‑CGGCACAAgggg > 2:1885546/1‑148 (MQ=255) ttttttCATGTGTCGCCGACAGAATCGCAACACCGCTCAGGTGTGGTTGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGccc < 2:3801165/150‑1 (MQ=37) ttttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCCTAGCGGCCCCGGCCATTTCCGCGTGTATGCAACAAACCAGGGGCTGCGATGCAGCCCCTTAG‑CGACACAAGGccc > 2:3411004/1‑150 (MQ=38) ttttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGccc > 2:4481996/1‑150 (MQ=255) gTCTTGTGTCGCCGACAGCATAGCAACCCGGCTCTGGTGTGGGCGCGGCGTTGTGGCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACaa < 2:8665/150‑1 (MQ=37) aTGGGTCGCCGACAGCATAGCAACACCGCTCTGGTGTGGGTGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAgg < 1:1755533/150‑1 (MQ=255) tCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTACGCGGGTATGCAACAAACCAGGGGCTGCGATGCAGCCCGTTCG‑CGACACAAAGCCCACAAAGGACcgc > 2:387701/1‑150 (MQ=38) cGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAg < 2:573038/150‑1 (MQ=255) aCAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGc < 1:2227983/150‑1 (MQ=255) aGCATAGCAACACCGCTCTGGTGGGGGCGGGGCGTTGTGTCGCTAACGGGCCGCATCGCGGCCCCGGCATTTGCCGGGTGTATGCAACAAACCTGGGGCTGATATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCtt < 1:557860/150‑1 (MQ=255) cagaGCACCACCGCTCTGGTGTGGGCGCGGCCTTGTGGCGCGAACGGGCCGCATAGCGGCCCCGGCAATTCCCGCGTGTTTGCAACAACCCTGGGGCTGCTATGCAGCCCTTCCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCa < 1:1492764/147‑1 (MQ=255) cATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCa < 2:3616358/150‑1 (MQ=255) atcccAACCCGGCTCCGGTGTGGGCGCGGCCTTGTGGCGCGAAGGGGCCGCATCGGGGCCCCGGAAATTTCCGGGTGTATGCAACAAACGTGGGGCTGCTATGCAGCCCTTCCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAg < 1:2314982/146‑1 (MQ=255) aGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAAGGCCCCAAAGCGGCCCCCGCACATTACGCGGGTTTGCAACAAAACTGGGGCGGCGATGCAGCCCGTTAG‑CGAAAAAAGGCCCACAAACGACCCCGCAGGCTTCACGc > 2:2991594/1‑150 (MQ=21) cAACACCGCTCAGGTGTGGGAGCGGCCTTGTGGGGCCGAAGGGGCCCATATCCGCCCCCGCCAGTTACCCGTGGAATCAACAAAACAGGGGCGGCGATTCAGCCCGGTAGCCCAACCAAGGCCCACAAA‑GACCCCGCAGGCGTCAGGccc > 2:1410809/1‑150 (MQ=255) acCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGAAATTTCCGCTTTTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGaa < 2:2547165/150‑1 (MQ=255) ccccTCCGGTGTGGGAGGGGCCTTGTGTCGCGAACGGGCCGCATCGCGCCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAc < 1:4216208/147‑1 (MQ=38) ccGCTCTGGTGTGGGAGCGGCCTGGTGGCGCTAACGGGCCCCATTGCGGCCCCGGCAATTTCCGCGTTTATGCAAAAACCCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAAc < 1:2068172/150‑1 (MQ=38) cAGGTGTGGGAGCGGCCTTGTGTCGCGAACGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTTGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGcc < 2:293577/150‑1 (MQ=255) gggCGCGGCCTTGTGCCGCGAACGGGCCGCTTCGCGGCCCCGGCAATTGCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTGCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTg < 1:4270856/150‑1 (MQ=255) gtgtCGCGAAAGGGCCGCATCGCGGCCCCGGCAATGTCCGCGTGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa < 2:3135059/150‑1 (MQ=255) gtgtCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa < 2:3135061/150‑1 (MQ=255) gtgtCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa < 2:1660654/150‑1 (MQ=255) tCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgcc > 1:2123147/1‑150 (MQ=255) tCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgcc > 1:2982204/1‑150 (MQ=255) gcgAACGGGCCGCACCGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc < 1:5011003/150‑1 (MQ=255) gcgAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 2:268957/1‑150 (MQ=255) gcgAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 1:5376501/1‑150 (MQ=255) gcgAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 1:5376703/1‑150 (MQ=255) gcgAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccgc > 2:1891488/1‑150 (MQ=255) gAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCa < 2:4859799/150‑1 (MQ=255) aaGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGa < 1:4860289/150‑1 (MQ=255) ggggCCGCTATGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGat > 2:4216168/2‑150 (MQ=255) ggggCCGCTATGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGat > 2:4215876/2‑150 (MQ=255) ggCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGa < 1:5158267/112‑1 (MQ=255) ggCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGa > 2:5158267/1‑112 (MQ=255) ggCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGAAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatca > 2:164918/1‑150 (MQ=255) gCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcat > 1:2256364/1‑150 (MQ=255) gCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcat > 2:679902/1‑150 (MQ=255) gCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcat > 2:2134787/1‑150 (MQ=255) ccGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGatcatc < 1:2016346/150‑1 (MQ=255) cgaaTAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATcc > 2:4863820/4‑150 (MQ=255) gCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCa > 2:5237543/1‑150 (MQ=255) gCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCa < 2:1774017/150‑1 (MQ=255) aTAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGc < 2:677921/150‑1 (MQ=255) | CGTACGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCG‑CGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGC > NC_002947/5557427‑5557722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |