| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,899,757 | G→C | 24.6% | intergenic (‑179/+55) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,899,757 | 0 | G | C | 24.6% | 230.7 / 79.2 | 118 | intergenic (‑179/+55) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base G (42/44); new base C (6/23); total (48/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.01e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.15e-01 | |||||||||||
Only 100 of 118 total aligned reads displayed.
AGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCC > NC_002947/5899610‑5899903 | agagGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAACCGCGAAAAAGGTTGTCGAt > 2:4295663/1‑150 (MQ=255) gTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCAc < 1:2973443/150‑1 (MQ=255) gatggggTTTTGCGCCTGGCTTGAGGGCATTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATc < 1:3447153/147‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATc < 2:2070500/150‑1 (MQ=255) gAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATc < 1:2114210/150‑1 (MQ=255) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTcgc < 1:2253970/150‑1 (MQ=37) tttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTcgc < 2:3445472/150‑1 (MQ=25) ttGCGCCTGGCTTGAGGGCACTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATACCCATTTAAGCGACCACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTcgcg < 1:1645845/150‑1 (MQ=25) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTcgcg < 1:4734010/150‑1 (MQ=37) ttGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTcgcg < 1:1402708/150‑1 (MQ=25) tGCGCCTGTCTTGAGGTAAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTATAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGTGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCgg < 1:4686729/150‑1 (MQ=21) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCgg < 1:175669/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCgg < 1:5180645/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCgg < 2:1970726/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCgg < 2:4828466/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCgg < 2:2673079/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCgg < 2:283479/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCgg < 2:2956559/150‑1 (MQ=255) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGATGGTGCATCGACCACCGT‑ATTCGCgg < 2:639016/150‑1 (MQ=37) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCgg < 2:3510557/150‑1 (MQ=25) tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCgg < 1:3921393/150‑1 (MQ=25) ggcgcCTGGCTTGAGGGCAATAGTAGTGAGGCGCGATTATTCTTAAAAATACTGTTGAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCgg < 1:231357/149‑1 (MQ=21) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAAACCCCAAAACCGTGGTCGATTCACCATCGC‑CATCGCGGGTAAAc > 1:3199664/1‑150 (MQ=255) gggCTTGAGGGCAAGAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTCAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAAc < 2:3139535/149‑1 (MQ=255) gCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTAAACCCCAAAACCGTGGTCGATTCACCCACGC‑ATTCGCCGGGAAAacc > 1:4634242/1‑150 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGc < 1:4169722/150‑1 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGc > 2:1833496/1‑150 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGc > 1:1263963/1‑150 (MQ=255) gAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTACATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTc < 2:3480644/150‑1 (MQ=255) gAGGGCAATAGGAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAATAATTTTTACATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTc < 2:3480269/150‑1 (MQ=255) ggCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGCATACGGTGGTCGTTGCACCCTCGC‑ATTCGCGGGTAAAACCGCTCCTa > 1:3456539/1‑150 (MQ=255) aaTAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCCCGAAAAAGGTGGTCGATGCACCAACGC‑AATAGCGGGGAAAACCGCaccaacca > 1:1587638/1‑150 (MQ=255) aTAGTAGTGAGGCGGTATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAg < 2:4165101/150‑1 (MQ=255) tagtagTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATTCACCAACGC‑ATTCGCGGGTAAACCCGCTCCAACCAgg > 2:1960805/1‑150 (MQ=255) agtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGACCACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAggg < 2:834567/150‑1 (MQ=255) gtagtGAGGCGGGATTATTCTTAAAAATACTGTTCAAGAATTTTTATATAACCATTTAAGAGAACCCGCGTCTGGTAGGTGGGGGTTTACCCGCTAATCCGGTGGCCGATGCACCATCGC‑ATGCGCGGGTAAACCCGCTCCTACCAgggg < 2:3702848/150‑1 (MQ=38) ggtgtGAGGCGGGATTATTCTTAAAAATACTTTTTAAGAATTTTTATATAACATTTTAAGAGACCACGCCTCGGGCAGGAGCGGGTTTCCCCGCGAATACGGTGGTCTATGCACCATCTC‑CGGCGCGGGTAAACCCGCTCCTACCAgggg < 1:5225390/147‑1 (MQ=255) aGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCAc < 1:4697032/108‑1 (MQ=255) aGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCAc > 2:4697032/1‑108 (MQ=255) aGGCGGGATTATTCTTAAAAAAACTGTTTAACAATTTTTATATAACCATTTAAGACAACACGCCCCTGGTAGGAGCGGTTTTACCCGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCGGGAAAACCCGCTCCTACCAGAGGcgtgtt < 2:1677567/150‑6 (MQ=14) gCGGGATATTTATTAAAAATATTTTTTAATATTTTTTATATAACCATTTAAGATAACACGCCTCTGGTTGGAGCGGTTTTACCCGCGATTACGGTGGTCGATGCACCATCGC‑TTTCGGGGTTAAACCCGCTCCTACCAGGGGCCATATgg < 1:865191/150‑1 (MQ=255) attattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAAcc < 1:3525328/122‑1 (MQ=255) attattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAAcc > 2:3525328/1‑122 (MQ=255) tattatTAAAAATACTGTTTAATAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCa < 2:1897831/150‑1 (MQ=255) ttCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCCAATTGGCCTTCAgg > 1:3138644/1‑150 (MQ=255) tCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCTAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGc < 2:3669159/150‑1 (MQ=255) ttAAAAATACTTTTTTAGAATTTTTATATAACCTTTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGGGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCgt < 2:4338316/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATAAGGGCCTTCAGGCgt > 2:2136921/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAAACCGCTCCTACCAGGGGCCCTATGGGCCTTCAGGCgt > 2:2992477/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATAGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCAGATGGGCCTTCAGGCgt > 2:5087153/1‑150 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTAACCCCCAAAAAAGTGGTGGATTCAACAAAGCAATACCCGGGAAAAACC‑CTACAACAAGCGGCCATAAGGGGCATCAGGCgt > 1:2801450/1‑150 (MQ=255) tAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGc > 2:1446671/1‑91 (MQ=255) tAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGc < 1:1446671/91‑1 (MQ=255) aTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGGAAACCCGCTCCTAACAGGGGCCAAATGGGCCTTCAGGCGTGTTTCt > 1:5327964/1‑150 (MQ=255) cTGTTTAAGATTTTTTATATAACCATTTCCGCGAACCCGCGTCTGGTCGGCGCGGGTTTCCCCGCGAATCCGGGGGGCGTGGCACCACCGC‑CTGCGCGGTAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCg < 1:3480139/150‑1 (MQ=255) tAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcg < 2:3151912/150‑1 (MQ=255) ttATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 2:3540998/150‑1 (MQ=255) tatataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGAAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt < 2:3696585/150‑1 (MQ=255) aaacatattAACACAACACGCCTGTGTTCGGGGGGGTTTTCCCGGCTAATAGGGTGGTCGAGCCACCAGCGC‑AGGCGGGGGAAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa < 1:1960805/143‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:4803183/150‑1 (MQ=255) aTTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCa < 2:4469266/150‑1 (MQ=255) aaGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCgg < 2:262947/71‑1 (MQ=255) ccgaACACGCCTGGGGTGGGCGCGGGTTTACCCGCTAATCGGGTGGTCCATGCACAACCGC‑ATTCGGGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa < 1:2376374/148‑1 (MQ=255) cGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCgg < 2:1159760/150‑1 (MQ=255) gCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGCTGCCCCAAAGC‑AATCCCCGGTAAAACCCCTCCGACCACGGGCCCTATGGGCCGTCCGGCGGGTGTCTGCGGCGCGCGGCGCGTGTACCAGGCCCCCGGCAGCGCCCGc > 2:11582/1‑150 (MQ=255) ggTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGAGGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAc < 2:518491/150‑1 (MQ=255) gttggtgCGGGTTTACCCGCTATTTGGGGGGTCTATGCACCATGGC‑ATTGGCGGTTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAca < 1:4295663/144‑1 (MQ=255) tAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcag < 2:1873944/150‑1 (MQ=255) gAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATCTGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagcag < 2:825009/150‑1 (MQ=255) gAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagcag < 2:824800/150‑1 (MQ=255) cgCGGGTTCCCCCGCGAATAGGGTGGACTCCGCACCTTCGA‑ATTCGGGGGTAACCCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 1:707154/149‑1 (MQ=255) aGCGGGTTTACCCGCGACTACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc < 2:4341112/150‑1 (MQ=255) gCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCg > 1:1223460/1‑150 (MQ=255) gTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAg > 2:3974911/1‑150 (MQ=255) ccGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa < 2:147372/105‑1 (MQ=17) ccGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa > 1:147372/1‑105 (MQ=17) ccGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:2534436/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:1971833/1‑150 (MQ=25) ccGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt > 1:2366065/1‑104 (MQ=17) ccGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt > 1:2366600/1‑104 (MQ=17) ccGCGAATGCGATGGTGCATCGACCACCGT‑ATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGt < 2:2366065/104‑1 (MQ=17) ccGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATTTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:4543825/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACGAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:710285/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3878545/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:3821057/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 2:4685509/1‑150 (MQ=255) ccGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt > 1:1408435/1‑150 (MQ=255) cgcgAATGCGATGGTGCATCGACCACCGT‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa < 1:1804101/118‑1 (MQ=21) cgcgAATGCGATGGTGCATCGACCACCGT‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACa > 2:1804101/1‑118 (MQ=21) cgcgAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:1263963/150‑1 (MQ=255) cgcgAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTc < 2:3629867/150‑1 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:4971184/1‑150 (MQ=255) gcgAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCg > 1:4625652/1‑150 (MQ=255) aaTACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCa < 2:3880113/150‑1 (MQ=255) aCGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACga < 2:3199664/150‑1 (MQ=255) ggtggtCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCCTATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:4805975/1‑150 (MQ=255) ggtggtCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 2:4806085/1‑150 (MQ=255) tggtCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatgat > 2:2653516/1‑150 (MQ=255) tggtCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatgat > 2:2653549/1‑150 (MQ=255) gtCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:4144262/1‑150 (MQ=255) | AGAGGTTTGAAGGGGTTTTGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGC‑ATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCC > NC_002947/5899610‑5899903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |