| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,275,093 | G→C | 5.7% | intergenic (‑284/+28) | PP_5462 ← / ← PP_5463 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,275,093 | 0 | G | C | 5.7% | 575.0 / 18.3 | 175 | intergenic (‑284/+28) | PP_5462/PP_5463 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (80/85); new base C (4/6); total (84/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
Only 100 of 186 total aligned reads displayed.
GCGAATGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCAGCCTGTTCGTCT > NC_002947/1274947‑1275241 | gCGAATGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATgggc < 1:2171048/150‑1 (MQ=255) gAATGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATgggcgg > 2:501171/1‑150 (MQ=255) gAATGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCCATcggcgg > 1:806856/1‑150 (MQ=255) aTGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATgggcgggc < 1:1799911/150‑1 (MQ=255) aTGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATgggcgggc < 1:2060193/150‑1 (MQ=255) tGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCt < 1:3127966/150‑1 (MQ=255) tGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCCATCGGCGGGCt < 1:4391884/150‑1 (MQ=255) gggCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCtt > 2:3269793/1‑150 (MQ=255) gggCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCtt > 1:5058626/1‑150 (MQ=255) ggCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCCATCGGCGGGCttt < 2:806856/150‑2 (MQ=255) aTTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gg > 2:5424872/1‑150 (MQ=255) aTTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gg < 1:649448/150‑1 (MQ=255) aTTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCCATCGGCGGGCtttgct < 1:3737058/150‑5 (MQ=255) ttGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑ggggg < 1:3997860/150‑1 (MQ=255) tacctttcggcggCGAGTGAATCTCGAAGCCAGCGTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGCGAGCGGTGCAGCGGGGGGTGAAGGTGGTAAAGGTGAAACGCGAATGAGCAAATCCCGCCGATGGGCGGGCTTCA‑gggggggg > 2:934915/8‑150 (MQ=255) gTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gggggggg > 1:3370650/1‑150 (MQ=255) gTCTATCCGGCGGAGAGTGAATGTCGAAGCCGGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gggggggg < 2:250518/150‑1 (MQ=255) cTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGGAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCa > 2:2311291/1‑150 (MQ=255) tATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGccg > 2:5385024/1‑148 (MQ=255) aTCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGa > 2:4130896/1‑150 (MQ=255) tCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGaa < 1:4368067/150‑1 (MQ=255) tCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGaa > 1:4242441/1‑150 (MQ=255) cggcggAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAgg < 1:4627982/150‑1 (MQ=255) cggcggAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAgg > 1:5253697/1‑150 (MQ=255) ggAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTa > 2:5434309/1‑150 (MQ=255) agTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCAGGGGGGGGGCAGAAGGGCTATCg > 1:1591632/1‑150 (MQ=255) agTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGt < 2:2127175/150‑1 (MQ=255) gTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGta > 2:2803426/1‑150 (MQ=255) gTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGta < 2:2207449/150‑1 (MQ=255) tGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGtac > 2:4274760/1‑150 (MQ=255) tGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGtac > 1:2443525/1‑150 (MQ=255) tGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACg < 2:3525102/150‑1 (MQ=255) tCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGt > 1:2367777/1‑150 (MQ=255) gAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTAA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCg > 1:4184352/1‑150 (MQ=255) aaGCCTGCTTCCCGGTTCCGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGc < 1:5178133/150‑1 (MQ=255) aGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gggggg < 1:4966407/121‑1 (MQ=255) aGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑gggggg > 2:4966407/1‑121 (MQ=255) ccggCTGCCCGGTTACGTCGGCCCCAATACGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAAGGAGCAACGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTtc < 1:4158046/147‑1 (MQ=255) ccTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGta < 2:1524468/137‑1 (MQ=255) tGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTtctc < 1:1353173/150‑1 (MQ=255) gCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCg > 1:1471402/1‑150 (MQ=255) cccGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCa < 1:3851852/150‑1 (MQ=255) cGGTTACGTCGGCTCCACTAAGGTGCGGGAGAGCGGTAATGCTGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTGCA‑GGGGGGGGCAGAAGGGCTCTCGTACTACGGGCGCTTGGCGTCCAcc > 2:4325326/1‑150 (MQ=255) cGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCAcc > 2:2444371/1‑150 (MQ=255) tACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGaaa < 1:501171/150‑1 (MQ=255) gTCGGCTCCTATAAGGTGCGGGAGAGCGGTAATGCGGGGGGTGAGGGTGGTAAAGGTGAAAGGAGCATGAGCAAAGCCCGCCGAGGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAACGGt < 2:1825052/150‑1 (MQ=255) gTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGACTGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGACGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGt > 1:3502930/1‑150 (MQ=255) gTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGACTGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGt < 2:5253697/150‑1 (MQ=255) tCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGATTCTCGTCCACCGAAAGGTa < 2:5072703/150‑1 (MQ=255) gCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGa > 2:2204946/1‑150 (MQ=255) tCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAg > 2:344663/1‑150 (MQ=255) tCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAg > 1:2802918/1‑150 (MQ=255) cAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCa > 1:3256436/1‑150 (MQ=255) cAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCa > 1:3732979/1‑150 (MQ=255) cAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTAGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCa > 2:3098175/1‑150 (MQ=255) aaTAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAggg < 1:4473834/104‑1 (MQ=255) aaTAAGGTGCGGGAGAGCGGTAATGAGGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAggg > 2:4473834/1‑104 (MQ=255) tAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCAccc < 2:4777301/150‑1 (MQ=255) gTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGACTGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCAcccgccc < 1:2988649/150‑1 (MQ=255) gTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCAcccgccc < 2:385263/150‑1 (MQ=255) tGCGGGAGAGCGGTAATGAGGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCAcccgcccg > 2:1815875/1‑150 (MQ=255) gCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACccgcccgc > 2:1037152/1‑150 (MQ=255) gCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACccgcccgc > 2:1037160/1‑150 (MQ=255) cGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGtac > 1:4097379/1‑104 (MQ=255) gCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCtca < 1:291540/150‑1 (MQ=255) gTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCtcatca < 2:1181322/150‑1 (MQ=255) gTAATGATGGGGGTGATGGTGGAAAAGGTGAAAGGAGAATGACCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCtcatca < 1:2283526/150‑1 (MQ=255) gatgGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAAt > 2:3509629/1‑150 (MQ=255) tgGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCACGTCCACCGAAAGGTAGGAACCACCCGCCCGCACACCACAAAAGGAAtag > 1:2156089/1‑148 (MQ=255) gggggTGAGGGTGGTAAAGGTGAAAGGAGACTGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGc < 1:3546940/150‑1 (MQ=255) gggTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGctc > 2:4449233/1‑148 (MQ=255) tGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCActcctc < 1:3436517/133‑1 (MQ=255) tGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCActcctc > 2:3436517/1‑133 (MQ=255) aTGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCa < 1:5434309/150‑1 (MQ=255) ggtggtAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAgg > 1:2857251/1‑150 (MQ=255) gggggtAAAGGTGAAAGGAGCATGAGCAAAGCCCGCCGATGGGCGGGCTTCAGGGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAg < 2:314691/147‑1 (MQ=255) gtggtAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCCAAAGGTAGGAAGCACCCCCCCGCACACCTCATCAGGAAAACCACTTTCAGGt > 1:938644/1‑150 (MQ=255) tggtAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGaa > 2:1760983/1‑99 (MQ=255) tggtAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGaa < 1:1760983/99‑1 (MQ=255) tAAAGGTGAAAGGAGAATGAGCAACCCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACt < 2:663064/150‑1 (MQ=255) tGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCActc > 2:1456064/1‑115 (MQ=255) tGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCttt < 1:3098175/150‑1 (MQ=255) gAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTg > 2:4642848/1‑150 (MQ=255) aGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCGCGTCCACCGAAAGGGAGGAAGCACCCGCCCCCCCTCCGCATCAGGAATCGCACTTTCAGGGGACTGCCGTTGGAt > 1:2478216/1‑150 (MQ=255) gagaATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATaa < 1:3039260/150‑1 (MQ=255) gagaATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGAGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATaa < 1:1309347/150‑1 (MQ=255) aaTGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGtt < 2:3709375/150‑1 (MQ=255) aaTGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGtt < 2:5219443/150‑1 (MQ=255) aaTGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCCCACTCCTCAACAGGAAACGCACTTTCAGGTGACTGCCTTTGGATAAGtt > 1:608173/1‑150 (MQ=255) tGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTACACCCAAATGTAGGAAGAACCCGCCCGCACTCCGCAACAGGAAACGCACAGTCAGGTGACTGCCGTTGGATAAGTTGt > 1:240714/1‑150 (MQ=255) tGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑‑GGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTa > 2:2670993/1‑150 (MQ=255) cctgaaGCCCGCCCATCGGCGGGCTTTA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCGTCTAGTCCACCGAAAGGTAGGAAGCACCCGCCCCCACACCACAAAAGGAATAGCACTTTAAGGTGACTGCCGTTGGATAAGTTTTAt > 1:3710126/5‑150 (MQ=255) gCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGACAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATc > 2:2052045/1‑150 (MQ=255) gCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTAta > 2:5139168/1‑149 (MQ=255) tgaaGCCCGCCCATCGGCGGGCTTCA‑‑GGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCa > 1:2577630/3‑150 (MQ=255) cAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGTGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACGTTCAGGTGACGGCCTTTGGAGAAGTTGTATcc > 2:4052332/1‑150 (MQ=255) aacgCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCa < 2:2880957/147‑1 (MQ=255) aaGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCAg < 2:3581136/150‑1 (MQ=255) cgccgATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCAGCCTGt < 1:4274760/150‑1 (MQ=255) ccgAGGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCAGCCTGTTc < 2:3031271/150‑1 (MQ=255) | GCGAATGGGCATTTTGGTCTATCCGGCGGAGAGTGAATGTCGAAGCCTGCTTCCCGGTTACGTCGGCTCCAATAAGGTGCGGGAGAGCGGTAATGATGGGGGTGATGGTGGTAAAGGTGAAAGGAGAATGAGCAAAGCCCGCCGATGGGCGGGCTTCA‑GGGGGGGGCAGAAGGGCTATCGTACTACGGTCGCTTCTCGTCCACCGAAAGGTAGGAAGCACCCGCCCGCACTCCTCATCAGGAATCGCACTTTCAGGTGACTGCCTTTGGATAAGTTGTATCCAGCCTGTTCGTCT > NC_002947/1274947‑1275241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |