| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,311,745 | T→A | 13.1% | intergenic (‑207/+71) | PP_1144 ← / ← rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,311,745 | 0 | T | A | 13.1% | 250.8 / 8.9 | 103 | intergenic (‑207/+71) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| Reads supporting (aligned to +/- strand): ref base T (21/59); new base A (13/2); total (38/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.62e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 104 total aligned reads displayed.
AGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGC > NC_002947/1311599‑1311894 | agGCAGTATAGGACGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACCGca < 1:4113819/150‑2 (MQ=255) ggCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCgg < 2:1111607/150‑1 (MQ=255) aGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTgg < 2:1999367/150‑1 (MQ=255) ataGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATg < 2:2547990/150‑1 (MQ=255) ataGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACCGCAGTGG‑ATg < 1:3600951/150‑1 (MQ=255) ataGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACCGCAGTGG‑ATg < 2:5356150/150‑1 (MQ=255) taGGAAGCACTACTTAAGCCTTCCTTAATAATGGAACAATTATTTATACTATTTTGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGCCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACCGCAGTGG‑ATGc < 1:2452343/150‑1 (MQ=255) ggaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTATTGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCa < 1:1017674/150‑1 (MQ=255) ggaaggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCa < 1:1017730/150‑1 (MQ=255) aggaGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGcttcgc < 1:4909337/150‑6 (MQ=255) tACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGTTTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCttt < 1:3910755/150‑1 (MQ=255) cTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGc < 1:382729/150‑1 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCAACCACAGCCGGGG‑GTGGCCCCCGCTTTGcc > 1:2636565/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATTCCACCGGCGTTTcc > 2:4806724/1‑150 (MQ=255) ttAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCCTCCCCAGCGGGGG‑ATGCCCCCCGCGTTGcc > 2:3130097/1‑150 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCg < 1:3876513/150‑1 (MQ=255) tAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCg < 1:5440910/150‑1 (MQ=255) aGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGTAATAATTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGgt < 1:2006119/150‑1 (MQ=255) aGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGgt < 2:3080794/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATACCTCCAATCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCAAAGCCGgtg < 1:1362005/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCAAAGCCGgtg < 1:1361999/150‑1 (MQ=255) gCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCAAATCGCCGTGAGGAATAATTTTGGGGCCCTCCTGCCTTCCTGTGGGCGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCAAAGCCGgtg < 1:2456883/150‑1 (MQ=255) ccTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCGCCAACCATACACAGCGGTGG‑GTGCCACCCGCGGTGGCGgtgt > 2:3412657/1‑150 (MQ=255) ttCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCCGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCAAAGCCGgtggca < 1:1983038/150‑4 (MQ=255) tCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCACCAACCACGGCGGGGG‑TTGCCACCCGCGGTGCCGGTGTTcg > 2:522601/1‑150 (MQ=255) ccTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCAAAGCCGgtggcatc < 2:3175099/150‑6 (MQ=255) cTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAACCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTcgcg > 2:2664898/1‑150 (MQ=255) tGACTATTGGCACAATGATTTCTACTATTTGTTTATAACGCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCgg < 1:237143/150‑1 (MQ=255) tGACTAATGGCACAATTATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGTAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCgg < 1:2428590/150‑1 (MQ=255) aCTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAACAATCCACATAGGTGGTATGCAACC‑GCGTTTCCGGGGTTAGCgggg > 2:59314/1‑149 (MQ=255) ggCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgccc > 1:1679751‑M2/1‑146 (MQ=255) gCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCCAGCCACCCCAGCGGTGG‑GTGGCCCCCGCGTTGCCGGTGTTAGCGGGCGGgcccg < 2:2749867‑M2/150‑6 (MQ=255) caggattTCTACGAGTGGGTTCTAACGCCAATCGCAGTGAGGAATAACTGTGGGGCCCTAATGCCGTCCTGGGGGAGCGGGCGAGCCCGCGACGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGGGTTCGCGGGCGTgcccgctcc > 2:4717758‑M2/4‑141 (MQ=255) tGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAACCACAGGGGGGG‑GAGGCCCCCGCGTTTCCGGGGTTCGCGGGCGGGCCCCCGcccc > 2:3684185/1‑149 (MQ=255) aTTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAGCAAACACAGCGGGGG‑ATGCCACCCGCTTTTCCGGTGTTCGCGGGCGGgcccgcgcccaca < 2:2307597‑M2/150‑14 (MQ=255) tCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCAACCACTGCGGTGG‑GTGCCCCCCGCGTGGCCCGTGTTCGCGGGCGTgcccccgcccaccagg < 1:4839563‑M2/150‑17 (MQ=255) cTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAggg < 2:4467907/150‑1 (MQ=255) cTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCATACACAGCGGTGG‑ATGCCACCGGCGGTGCCGGGGTTCGCCGGCGGGCCCGCTCCCACCAggg > 2:4750366/1‑150 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCg > 1:4387704/1‑118 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCg < 2:4387704/118‑1 (MQ=255) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAAACAATGCGGGGG‑GTGCCACCCGCTTTTCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAgggg > 2:3289467/1‑150 (MQ=38) tACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGCAGCAACCACAGCGGGGG‑ATGCCCCCCGCGTTGCCCGGGTTCGCCGGCGGGCCCCCTCCCCCAAcggg > 2:3586603/1‑150 (MQ=255) tttGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCgg < 2:4763931/150‑1 (MQ=255) tttGGTTATAACTCCAATCGCAGGGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCgg < 2:1979826/150‑1 (MQ=255) ggTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAGCAAACAAAGCGGGGG‑ATTCCACCCGCGTTGGCCGGGTTCGCGGGCGTGCCCCCTCCCACAACGGGCGCGGGGc > 2:1841965/1‑150 (MQ=255) tataACCCCAATCGCCGTGAGTAATAATTTTGGGGCCCTAAGGCCTTCGTGTGGGCGCGGGCGCGCCCGCGACGCATCCACTGCGGGGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTg < 1:907913/150‑1 (MQ=25) ataACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTg < 2:1489618/82‑1 (MQ=255) ataACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTg < 2:1489764/82‑1 (MQ=255) ataACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTg > 1:1489618/1‑82 (MQ=255) ataACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTg > 1:1489764/1‑82 (MQ=255) cTCCAATCGCAGTGCGGAATAAATTTGGGGCCCTAAGGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTa < 1:3577010/150‑1 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCAAGCATACACAGCGGGGG‑TTGCCACCCGCGTTGCCGGTGTTCGCGGGCGTGCCCCCTCCCCAAACGGGCGCGGGGCCGGCGCTag > 2:3068148/1‑150 (MQ=37) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCGACCAACCACACCCGGGG‑CTGCCCCCCGCGTTGCCCGGGGTCGCCGGCCGGGCCCCCCCCCCAACGGGCGCCGGGCCAgccccac > 2:1444373/1‑145 (MQ=255) tCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAAACAAACCCAGCGGGGG‑GTTGCACCCCCTTTTCCGGGGGTTGCGGGCGGGCCCCCGCCCCCAACGGGCGCCGGGCCAgcccaag > 1:432941/1‑145 (MQ=255) ccAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCAACCACAGCGGGGG‑ATTCCACCGGCGTTGCCGGGGGTCGCGGGCGTGCCCCCTCCCACAAGGGGCGCGGGGCCAGCGCTagc > 2:1281256/1‑150 (MQ=38) ccAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCATACACAGCGGTGG‑ATGCCACCCGCGTTGCCCGTGTTAGCGGGCGTGCCCCCTCCCACAAGGGGCGCGGGGCCAGCGCTagc > 2:1280811/1‑150 (MQ=255) aaTCGCAGTGAGGAATAAATTTGGGGCCCTCATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca < 2:4224767/150‑1 (MQ=255) gCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGCGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAgccagcca < 2:4347960/150‑1 (MQ=255) gTGAGGAATAATTTTGGGGCCCTACGGCCTTCGTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGccacca < 1:3220572/150‑1 (MQ=255) aaTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcgc < 2:2208840/150‑1 (MQ=255) tAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctccc < 2:353722‑M2/107‑11 (MQ=255) tAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctccc > 1:353722‑M2/1‑97 (MQ=255) attttGGGGCCCTTTTGCCTTCGTGTGGGAGGGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 1:4750366/148‑1 (MQ=255) aaTTTGGGGCCCTAATGCCTTCCTGTGGGAGGGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 1:2822558/150‑1 (MQ=255) aaTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 2:2117132/150‑1 (MQ=255) aaTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt < 2:5129936/150‑1 (MQ=255) ccTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCCCTGCGGGGG‑GTGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggcaggccttagggccccaaatttattcctcacggcgattggcggtctaacc < 2:4152464‑M2/150‑66 (MQ=255) ttCCTGTGGGCGCGGGCGCGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCGAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg < 1:2740760/150‑1 (MQ=255) ttCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg < 2:3936505/150‑1 (MQ=255) ttCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg < 2:1996645/150‑1 (MQ=255) cgtgtgGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcggc < 1:1354479/148‑1 (MQ=255) ccTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcggc < 1:4267959/150‑1 (MQ=255) ccTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTGGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcggc < 1:4268126/150‑1 (MQ=255) cggtgGGAGCGGGGGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGcc < 2:3477877/148‑1 (MQ=255) tgGGAGCGGGCGAGCCCGCCAAGCATACACTGCGGTGG‑ATGCCCCCGGCATTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCCGGGCCAGCCCAAGCCACCCACCAACACGCGAATTGCATACAGGCGCCGGGCGGCCGtc > 2:2235594/1‑150 (MQ=25) gCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtg < 2:4627715‑M2/150‑86 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccat < 1:4648223‑M2/150‑90 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAtt > 2:2952054/1‑150 (MQ=255) gCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCGTCCAGGCGCAGGGCGGCCTTCTCCAGCAtt > 2:4696499/1‑150 (MQ=255) aGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattag < 1:3185955‑M2/150‑93 (MQ=255) cccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAg > 2:3748696/1‑150 (MQ=255) ccGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTGCCAGGCGCAGGGCGGCCTTCTCCCGCATTGCCAgg > 2:49804/1‑150 (MQ=255) cgcgAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGc < 1:3480590/150‑1 (MQ=255) aGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattagtcaggaagg < 1:4995665‑M2/150‑102 (MQ=255) gCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCa > 1:4746595/1‑132 (MQ=255) gCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCa < 2:4746595/132‑1 (MQ=255) gCATCCACCGCAGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCtt > 1:4219828/1‑150 (MQ=255) cATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcc > 2:2390496/1‑84 (MQ=255) cATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcc < 1:2390496/84‑1 (MQ=255) cATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTc < 2:5127644/150‑1 (MQ=255) cATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTc < 2:2561006/150‑1 (MQ=255) cATCCACGGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattagtcaggaaggct > 1:4152464‑M2/1‑47 (MQ=255) aTCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg > 2:1792957/1‑150 (MQ=255) tCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc < 1:2304984/150‑1 (MQ=255) ccACCGCAGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgcg > 1:841259/1‑150 (MQ=255) cACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGcgcg > 1:4359944/1‑65 (MQ=255) cACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGcgcg > 1:4359932/1‑65 (MQ=255) cACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGcgcg < 2:4359944/65‑1 (MQ=255) cACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGcgcg < 2:4359932/65‑1 (MQ=255) tGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattagtcaggaaggcttaagtac < 1:5377029‑M2/150‑111 (MQ=255) | AGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGG‑ATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGC > NC_002947/1311599‑1311894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |