| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503 | 1979278 | 776 | 24 [0] | [0] 21 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 15 (0.680) | 12/116 | 0.4 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > NC_000913/1978435‑1978568 | ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG > 2:312266‑M1/1‑68 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt < 2:710705‑M1/68‑2 (MQ=255) gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCATTTACTTATCATAAATG < 2:726782‑M1/63‑1 (MQ=255) gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG > 1:726780‑M1/1‑63 (MQ=255) aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactattgatt > 2:98660‑M1/1‑48 (MQ=255) gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 2:810263‑M1/68‑26 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 2:843366‑M1/68‑30 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt > 1:171642‑M1/1‑38 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt > 1:550657‑M1/1‑38 (MQ=255) acaAAACACTCAAATACTTAACATAAAAGtataagtcatacttttgctttgggtgtatttcaatctgt < 2:876969‑M1/68‑40 (MQ=255) acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa > 1:775369‑M1/1‑24 (MQ=255) ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc > 1:755242‑M1/1‑16 (MQ=255) aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc > 1:13688‑M1/1‑14 (MQ=255) aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc > 2:372914‑M1/1‑14 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta > 2:117887‑M1/1‑12 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta < 1:164951‑M1/68‑57 (MQ=255) tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac < 1:5660‑M1/68‑58 (MQ=255) tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac < 1:312264‑M1/68‑58 (MQ=255) cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgct < 2:755244‑M1/68‑61 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 2:44246‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:909320‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:821416‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag > 1:735690‑M1/1‑2 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctaagctagcaag > 2:672968‑M1/1‑2 (MQ=255) | GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > NC_000913/1978435‑1978568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |