Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1199844	1200325	482	3 [2]	[2] 3	intE	e14 prophage; putative integrase

CCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAAT  >  NC_000913/1200283‑1200393                                            |                                                                    ccAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTtg                                             >  1:934704/1‑68 (MQ=255)                         cgcgcCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggc                     <  1:753700/67‑1 (MQ=255)                                            caatcaGGACGGAGCGAACTACTAGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAAt  <  2:934708/68‑1 (MQ=255)                                            |                                                                    CCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCGATATACTCATCAAGCAAT  >  NC_000913/1200283‑1200393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑