| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2962469 | 16 (0.820) | 4 (0.240) | 3/114 | 1.5 | 23.7% | coding (296/324 nt) | ppdC | putative prepilin peptidase‑dependent protein |
| ? | NC_000913 | = 2962525 | 12 (0.720) | coding (240/324 nt) | ppdC | putative prepilin peptidase‑dependent protein | |||||
CGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTG > NC_000913/2962403‑2962533 | cGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGt > 2:625147/1‑68 (MQ=255) cccTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTg > 1:618360/1‑68 (MQ=255) aCATAGCGGCTCCTGACAACAGACGAATCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCg > 1:71494/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:221035/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:390207/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:322580/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 2:64852/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:209369/1‑68 (MQ=255) aTAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCggg < 2:311101/68‑1 (MQ=255) gCTCCTGACTACTGACGATTAGGGCAATGCAGGAGGGTCATCTCGCCTTCTCTGCACCCGGGTGaaaa > 2:613158/1‑67 (MQ=255) gCTCCTGACTACTGACGAATCGGGCAATGCAGGCAGGTCATATCGCCTTCTCTGCCCACGGGTGatca > 2:613801/1‑65 (MQ=255) actGACGATTCGGGCAATGCAGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggca > 2:530930‑M1/1‑27 (MQ=255) tGACGATTCGGGCAATGCAGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcaga < 1:530930‑M1/68‑44 (MQ=255) aCGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGa < 2:109979/68‑1 (MQ=255) cGATTCGGGCAATGCAGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaa > 2:390207‑M1/1‑22 (MQ=255) cGATTCGGGCAATGCAGGCGGGatgtgtcagcatcagcgttacgctagtttcacacgggggcagagag > 2:351584‑M1/1‑22 (MQ=255) gATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATg < 1:323748/68‑1 (MQ=255) ggCAATGCTGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGaaa < 2:623090/45‑1 (MQ=255) ggCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGaaa > 1:623089/1‑45 (MQ=255) cAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGAcaca < 2:694296/68‑1 (MQ=255) cAGGCGGGatgtgtcagcatcagcgttacgctagtttcacccggtggcagagaaggcgagatgacccg < 2:317101‑M1/68‑61 (MQ=255) cAGGCGGGatgtgtcagcatcagcgttacgctagattcacccgggggcagagaaggcgagatgacccg > 2:221035‑M1/1‑8 (MQ=255) ggCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccgcc > 1:254026‑M1/1‑6 (MQ=255) ggCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcc > 1:254026‑M2/1‑62 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAATCTAGCGTAACGCTGATGCTGACACATcccgcctg > 2:221035‑M2/1‑60 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCACCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcctg < 2:317101‑M2/68‑9 (MQ=255) | CGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTG > NC_000913/2962403‑2962533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |