| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 30 (1.060) | 16 (0.750) | 13/100 | 0.3 | 48.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 11 (0.510) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAG > NC_000913/1207724‑1207855 | tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT > 1:875773‑M1/1‑68 (MQ=255)tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT > 1:905768‑M1/1‑68 (MQ=255)tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT > 2:713024‑M1/1‑68 (MQ=255)tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT > 1:309049‑M1/1‑68 (MQ=255)tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT > 1:805170‑M1/1‑68 (MQ=255) aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCGCTGTGCAAACGGCTCTCGAAAACCTTGG > 1:859666‑M1/1‑68 (MQ=255) aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGG > 1:990232‑M1/1‑68 (MQ=255) gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT > 2:424929‑M1/1‑68 (MQ=255) gCCGCAAGAATCCGTTTGGCGAAATCAAATCGGATGGCACTGTGCAAACGGCACTCGAAAACCTTGGT > 2:46262‑M1/1‑68 (MQ=255) gCCGCAAGAATCAGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT > 2:483207‑M1/1‑68 (MQ=255) ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT < 2:905768‑M1/68‑1 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 2:62502‑M1/6‑1 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt > 1:437318‑M1/63‑68 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:480169‑M1/8‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:836278‑M1/8‑1 (MQ=255) ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 2:200765‑M1/9‑1 (MQ=255) ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 2:337518‑M1/9‑1 (MQ=255) cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG < 2:875773‑M1/68‑1 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa < 2:990232/68‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:94891‑M1/6‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt > 2:94891‑M1/47‑52 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa < 1:271007‑M1/22‑1 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc < 1:655776/68‑1 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac < 2:234877‑M1/68‑12 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac < 1:855102‑M1/68‑12 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCa < 1:740472/68‑1 (MQ=255) aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgtt < 2:176605‑M1/68‑17 (MQ=255) gccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag < 2:290212‑M1/33‑1 (MQ=255) tCGGATGGCACTGTGCAAACGGCTCTCGAAATCCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 1:162084/68‑1 (MQ=255) cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca > 2:356539/1‑68 (MQ=255) cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca > 2:322696/1‑68 (MQ=255) gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc > 2:490462/1‑68 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg > 2:899982‑M1/31‑68 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 2:313637‑M1/30‑68 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 2:309049/68‑1 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt < 2:423969/68‑1 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt < 2:423970/68‑1 (MQ=255) cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt > 2:11637‑M1/28‑68 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccgg > 2:757243‑M1/1‑42 (MQ=255) tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca < 2:473440‑M1/32‑1 (MQ=255) tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca > 1:473440‑M1/26‑57 (MQ=255) aCTGTGCAAGCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:663021/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt > 1:245801‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggt > 2:243145‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc > 2:241931‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc < 1:241931‑M1/63‑23 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 2:11778/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 2:600839/1‑68 (MQ=255) gttatttcttcattttcataaacgTTGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:62502‑M1/25‑68 (MQ=255) cTGTGCAAACGGCTCTCGAAATCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 2:241296/68‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:405505/68‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:822299/68‑1 (MQ=255) tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGAAACGGCTACATTAGGa < 2:665763‑M1/50‑1 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc > 1:720978/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 2:218522/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 2:158224/1‑68 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa < 1:922779/68‑1 (MQ=255) ttttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc < 1:242841‑M1/56‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt < 1:158224/68‑1 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt < 2:51069/68‑1 (MQ=255) cGAATACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCATCGGCTACATTAGGACGCACCGGtt < 1:483207/68‑1 (MQ=255) cGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcca < 1:97562‑M1/68‑45 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 2:805170/68‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc > 1:904632/1‑68 (MQ=255) cccTTGGTATGGGAGAAGGAGCAAAACTCTATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:832245/67‑1 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa > 1:364878‑M1/4‑68 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa > 2:391783‑M1/4‑68 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa > 1:665763‑M1/4‑68 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa > 2:703090/1‑68 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:279706/68‑1 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 2:727468/68‑1 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 2:335937/68‑1 (MQ=255) cgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg < 2:566166‑M1/66‑1 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa > 1:312586‑M1/2‑66 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 2:312586‑M1/65‑1 (MQ=255) | TAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAG > NC_000913/1207724‑1207855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |