| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503 | 1979278 | 776 | 27 [0] | [0] 26 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 26 (1.050) | 15/116 | 0.3 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG > NC_000913/1978435‑1978560 | ggggggCTGCGATTTTCAATAATGCGTGATGATGATCACACAAAACACTCAATTACATAACATAAATG > 2:1004794‑M1/1‑68 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt < 2:482149‑M1/68‑2 (MQ=255) ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta > 1:361197‑M1/1‑66 (MQ=255) tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt < 2:738241‑M1/68‑8 (MQ=255) gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 2:815635‑M1/68‑26 (MQ=255) gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 1:713145‑M1/68‑26 (MQ=255) gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgt < 1:484954‑M1/68‑28 (MQ=255) gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgt < 1:795889‑M1/68‑28 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 2:778826‑M1/68‑30 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 2:448628‑M1/68‑30 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 1:876680‑M1/68‑30 (MQ=255) aGATCACACAAAACGCTCAATTACTTACCATAAATGtataagtcatacttttgatttgggtgtatttc > 1:705588‑M1/1‑36 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:969884‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:515404‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 1:1017509‑M1/62‑30 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat > 2:1017509‑M1/1‑33 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 2:318739‑M1/58‑26 (MQ=255) tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt > 1:318739‑M1/1‑33 (MQ=255) acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt < 2:353973‑M1/68‑40 (MQ=255) aaaCACTCAATTACTTAACATAAATGtataagtcata > 1:634234‑M1/1‑26 (MQ=255) aaaCACTCAATTACTTAACATAAATGtataagtcata < 2:634234‑M1/37‑12 (MQ=255) cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa > 1:230266‑M1/1‑23 (MQ=255) aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 1:680434‑M1/46‑30 (MQ=255) aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtat > 2:680434‑M1/1‑17 (MQ=255) ttAACTTAAATGtataagtcatacttatgttttgggtgtatttcaatctgttaaaaagtttttcgcta > 1:714931‑M1/1‑12 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta > 2:580357‑M1/1‑12 (MQ=255) aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg > 2:410855‑M1/1‑10 (MQ=255) | GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG > NC_000913/1978435‑1978560 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |