| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 19 [0] | [0] 19 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 19 (0.760) | 13/116 | 0.4 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTG > NC_000913/258620‑258736 | ggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg < 1:282429‑M2/4‑1 (MQ=255) cacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa > 1:811744‑M2/62‑68 (MQ=255) ccgaagagcagattgatcaaaaaatttacctctctaggcccgtatattcgtgaaggtaAGTGCAAAGa < 1:1012930‑M2/10‑1 (MQ=255) ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa < 2:414074‑M2/10‑1 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCTAAGATAATCGATTCTATTTCGATTg > 2:375266‑M2/38‑68 (MQ=255) aaatttaccgcactaggcacgtatattcgtgaaggtaAGAGCAAAGATAATCGATTCTTTTtcgaaag > 2:997081‑M2/38‑65 (MQ=255) aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 2:187148‑M2/32‑1 (MQ=255) aatttaccgcactaggcccgtatattcgcgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt < 1:1023108‑M2/32‑1 (MQ=255) ttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg < 2:565050‑M2/35‑1 (MQ=255) taccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 2:848175‑M2/36‑1 (MQ=255) accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc > 1:8168‑M2/32‑68 (MQ=255) gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:457481‑M2/40‑1 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt < 2:291858‑M2/46‑1 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCa > 2:420407‑M2/21‑68 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCa > 2:818207‑M2/21‑68 (MQ=255) cacgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTATTTCGATTGTCTGGCTGTATGCGTCa > 2:662577‑M2/21‑68 (MQ=255) accgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGACTGGCTGTATGCGTCa > 2:299877‑M2/21‑68 (MQ=255) cgtatattcgtgaaggtaAGTGCAAAGATAATCGAATCTTTTTCGATTGTCTGGCTGTATGCGTCAAc > 1:284279‑M2/19‑68 (MQ=255) atattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTg > 1:905980‑M2/16‑68 (MQ=255) | CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTG > NC_000913/258620‑258736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |