| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,984,188 | 0 | C | G | 37.5% | 25.5 / 15.6 | 24 | G294G (GGG→GGC) | araG | L‑arabinose ABC transporter ATPase |
| Reads supporting (aligned to +/- strand): ref base C (5/10); new base G (9/0); total (14/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.02e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGG > NC_000913/1984121‑1984250 | ggTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTAcgc < 1:185659/68‑1 (MQ=255) gTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCGAACATGCCTTTCATTAATTCGCTAcgcc > 1:261112/1‑68 (MQ=255) gTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTAcgcc < 1:414237/68‑1 (MQ=255) gTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTAcgcc > 2:816285/1‑68 (MQ=255) tCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTAcggcc > 1:823130/1‑68 (MQ=255) gATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTAcgccccg < 2:244693/68‑1 (MQ=255) atatAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTAcgccccgc < 1:952358/68‑1 (MQ=255) atatAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTAcgccccgc < 2:187626/68‑1 (MQ=255) aaaCCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCt < 2:232821/68‑1 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTAcc > 2:854150/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTAcc > 2:832709/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTAcc > 2:421379/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTAcc > 1:968869/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTAcc > 2:219293/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGACCGGCCCTAcc > 2:975177/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTAcc > 1:46719/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCACTAcc > 2:790949/1‑68 (MQ=255) ccTGAACGGCGGTGAATTGCGTCCCGCCAAACATGCCTGTCAATAATTCGCTGCGGCCAGCCCCTAcc > 1:607431/1‑68 (MQ=255) tGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAg < 2:155806/68‑1 (MQ=255) ggcggTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTACCAGACCaa > 2:597018/1‑68 (MQ=255) tGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGc < 2:46719/68‑1 (MQ=255) tGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGc < 2:496448/68‑1 (MQ=255) aTTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGccc < 1:807313/68‑1 (MQ=255) tttGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCACTACCAGACCAACCAGCCca > 2:176038/1‑68 (MQ=255) gCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCcaaca < 1:601502/68‑1 (MQ=255) cGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCcaacaa < 1:994665/68‑1 (MQ=255) gTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGc > 2:575293/1‑60 (MQ=255) gTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGc < 1:575293/60‑1 (MQ=255) tCGCTACGGCCCGCCCCAACCAGACCAAACAGCCCAACAATTTCACCACAGCGAACCGCCAGACatat > 1:390291/1‑68 (MQ=255) tCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTAt > 2:500538/1‑68 (MQ=255) cTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTgg < 1:11869/68‑1 (MQ=255) cTACGCCCCGCCCCAACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTgg < 2:1014626/68‑1 (MQ=255) | GGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGG > NC_000913/1984121‑1984250 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |