| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 100.0% | 81.6 / NA | 23 | intergenic (‑2/+1) | glpR/glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (17/6); total (17/6) | |||||||||||
TGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTG > NC_000913/3560390‑3560513 | tGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGcgc > 2:662064/1‑66 (MQ=255) cTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGa > 2:695433/1‑68 (MQ=255) cTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGa > 1:552717/1‑68 (MQ=255) gATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAgg > 1:310959/1‑68 (MQ=255) gATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAgg > 2:511814/1‑68 (MQ=255) gATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCAATGATGGCGCAGGATCAgg > 2:358524/1‑68 (MQ=255) cACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTc > 2:784312/1‑68 (MQ=255) tgtTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGc < 1:50446/68‑1 (MQ=255) tAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCa < 1:138086/68‑1 (MQ=255) ccGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCa < 1:716185/65‑1 (MQ=255) ccGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCa > 2:716186/1‑65 (MQ=255) ccGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTg > 1:741091/1‑68 (MQ=255) ccGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTg > 2:535872/1‑68 (MQ=255) ggAAGGCAGCGCCGCACCGCCATGACGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTcgc < 1:502696/68‑1 (MQ=39) aaGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGATCATTGAGGTCgcgg > 1:157553/1‑68 (MQ=39) aGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGt > 2:16089/1‑38 (MQ=37) aGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGt < 1:16089/38‑1 (MQ=37) gCAGCGCCGCGCCGCCATGATGGCGCAGGAGCAGGATGTGCTCCGCCAGCTCGATGAGGTCGCGGCGa > 1:53534/1‑68 (MQ=255) gCAGCGCCGCACCGCCATGATGGCGAAGGATCAGGTTTTGCTAAGCCAGCTCATTGAGGTCGCGGCGa > 2:184242/1‑68 (MQ=255) gccgcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAg > 2:102109/1‑44 (MQ=37) gccgcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAg < 1:102109/44‑1 (MQ=37) gccgcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATGGAGGTCGCGGGGAATAgg > 2:725690/1‑67 (MQ=38) cgcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCt > 2:192665/1‑68 (MQ=255) cATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTg > 2:537188/1‑68 (MQ=255) | TGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTG > NC_000913/3560390‑3560513 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |