| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,579,678 | Δ3,750 bp | IS1‑mediated | yhhX–yrhA | yhhX, ryhB, yhhY, yhhZ, yrhA |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3579678 | 3584148–3583429 | 3752–4471 | 34 [1] | [1] 2 | yhhX–[insB1] | yhhX,ryhB,yhhY,yhhZ,yrhA,insA,[insB1] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3579677 | 1 (0.050) | 33 (1.490) | 24/132 | 0.0 | 97.1% | intergenic (‑32/+91) | yhhW/yhhX | quercetinase activity in vitro/putative oxidoreductase |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
ACCACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3579613‑3579677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT > NC_000913/3583428‑3583493 ACCGCGTTCATATGCTTTGCGTAAGTAGATCATTTGTATTCGCACCCTGAATGATTTCGATGGGCGGT > 1:389054/1‑68ACCACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGT > 1:197683/1‑68ACCACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGT > 1:758297/1‑68 CACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGA > 1:552142/1‑68 TTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCT > 2:599074/1‑68 TTCATTTGCTTTGAGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCT > 2:199340/1‑68 taATTTGCTTTGCGTAAGTAGATCATTTGTAATCGACCCCTGAATGATTACGATGGGAGTTGATGCTG > 2:752739/3‑68 TCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTG > 2:84963/1‑68 ATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCC < 1:198669/68‑1 TGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAAC > 1:415969/1‑68 CGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGA < 2:584736/68‑1 GTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGAT < 2:197683/68‑1 AGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTA > 1:321330/1‑68 GTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAG > 1:670671/1‑68 TAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGT < 2:116321/68‑1 GATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGT < 1:84963/68‑1 ATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTA > 1:467250/1‑68 ATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAA > 1:195354/1‑51 ATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAA > 1:411220/1‑51 ATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAA < 2:195354/51‑1 ATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAA < 2:411220/51‑1 GTATTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT < 2:415969/68‑1 TTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT > 1:446005/1‑68 TTCGCCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT < 1:599074/68‑1 CCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG > 1:213350/1‑68 CCCCCTGAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG > 1:198656/1‑68 GAATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGC < 1:52824/68‑1 cATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGCGTTTTTGAGGTGCT < 1:101119/67‑1 AATGATTTCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCT < 2:788728/68‑1 TCGATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG < 2:198656/68‑1 GATGGGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT < 2:379358/68‑1 TGGGCGGTGATGCTGCCATCTTTCTGATTTAGTGTATGATGGTGTTTTTGAGGAGCTCCAGTGTCTTC < 1:629850/68‑1 GCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT < 2:582918/68‑1 ACCACGTTCATTTGCTTTGCGTAAGTAGATCATTTGTATTCGCCCCCTGAATGATTTCGATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3579613‑3579677‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT > NC_000913/3583428‑3583493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |