| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 30 (1.360) | 8 (0.480) | 8/100 | 0.5 | 29.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 15 (0.900) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
AGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCT > NC_000913/1207726‑1207857 | taaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg > 2:278480‑M1/65‑68 (MQ=255)aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTgg > 1:28979/1‑68 (MQ=255) gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGt < 2:274906/68‑1 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:663208‑M1/8‑1 (MQ=255) tccacctggtaaaagaaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:240999‑M1/8‑1 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 2:730016‑M1/53‑68 (MQ=255) taatagcatgaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgagaatgc > 2:434252‑M1/52‑65 (MQ=255) taaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa > 1:6181‑M1/52‑68 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa < 2:305021/68‑1 (MQ=255) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGc < 2:666586/68‑1 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc < 2:687729/68‑1 (MQ=255) atgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa < 1:200425‑M1/28‑1 (MQ=255) tgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt > 1:785737‑M1/40‑68 (MQ=255) ctGGCACTGTGCAATCGGCTCTCGAATACCTTGGTTTGGGAGAAGGTGCAAAACTCAATGCAGCAACg < 1:550931/67‑1 (MQ=25) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 1:254315‑M1/30‑68 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 1:128333/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAACACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGAGACGGCAAc > 2:521317/1‑68 (MQ=25) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAACCTCAATGCAGCACCGGCTAc > 1:782518/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 1:422196/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:656194/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:353687/1‑68 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGCTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 1:129370/68‑1 (MQ=255) cTGTTCTAACGTCTCTCGAAAACCTAGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:388935/68‑1 (MQ=37) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 2:700481/68‑1 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:96823/68‑1 (MQ=255) tgCAAAAGGCTCTCGAAAACCTTGGTATGGGAGAAGGAGCAAAACTCAATGCCGCAACGGCTACATTa > 1:374707/1‑68 (MQ=25) tcattttcatatacgTTGGTTTGGGAGAAGGAGCAATACTCAATGCAGCAACGGCTACATTAGGACGc > 2:373757‑M1/16‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCTACATTAGGACGc > 2:25656/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:186177/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 2:332064/1‑68 (MQ=255) cGGCACTCGAAAAACTTGGTATGGGAGAAGGAGCAAAACTCAATGCAGCAACGTCTACATTAGGACGc > 2:449710/1‑68 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 2:274909/68‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 2:186177/68‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:617688/1‑49 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 2:617688/49‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc > 2:223231/1‑68 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc > 1:46240‑M1/4‑46 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 2:46240‑M1/43‑1 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACTCACCGGTTTCATa < 2:277983/68‑1 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 2:14524/68‑1 (MQ=255) cgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg > 2:200425‑M1/3‑68 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 1:389669/68‑1 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCGACATTAGGACGCACCGGTTTCATAGc < 1:620020/68‑1 (MQ=255) TTGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCt > 2:565421‑M1/1‑68 (MQ=255) | AGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCT > NC_000913/1207726‑1207857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |