| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,299,499 | Δ1,199 bp | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1299499–1300697 | 1300697 | 1–1199 | 33 [0] | [0] 37 | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 29 (1.200) | 21/124 | 0.1 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGC > NC_000913/1300633‑1300765 | gcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaata > 1:830771‑M2/66‑68 (MQ=255) ttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaataat < 1:843328‑M2/5‑1 (MQ=255) aataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTg < 2:488283‑M2/14‑1 (MQ=255) taattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGtt < 2:301307‑M2/16‑1 (MQ=255) attgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTaa < 2:377294‑M2/18‑1 (MQ=255) tgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAat > 1:848481‑M2/49‑68 (MQ=255) tattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCAtt < 1:803274‑M2/31‑1 (MQ=255) attccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCact > 2:61350‑M2/33‑68 (MQ=255) ttccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCacta < 1:663153‑M2/37‑1 (MQ=255) ttccactgccttaggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCacta < 2:955108‑M2/37‑1 (MQ=255) tccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactac > 1:793225‑M2/31‑68 (MQ=255) gcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAAc < 1:147813‑M2/44‑1 (MQ=255) tggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTaa < 2:861867‑M2/49‑1 (MQ=255) gtagaggaaagtgctaaATAATAATCAATTTTTAAATTATTGTGCATTTCACTACTGGAACTGTAATc > 1:887225‑M2/18‑68 (MQ=255) gtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATc > 1:239095‑M2/18‑68 (MQ=255) agaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAg > 1:591079‑M2/16‑68 (MQ=255) tggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGaa < 2:149405‑M2/55‑1 (MQ=255) ggaaagtgctaaATAATAATCAATTGTTAAattat > 1:510089‑M2/13‑35 (MQ=255) ggaaagtgctaaATAATAATCAATTGTTAAattat < 2:510092‑M2/23‑1 (MQ=255) aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg < 1:930562‑M2/58‑1 (MQ=255) aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg < 2:262661‑M2/58‑1 (MQ=255) aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg > 2:173963‑M2/11‑68 (MQ=255) aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg < 1:931364‑M2/58‑1 (MQ=255) aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg > 1:21750‑M2/11‑68 (MQ=255) aaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAg > 1:575764‑M2/11‑68 (MQ=255) gctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGa > 2:510649‑M2/6‑68 (MQ=255) gctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGa > 1:932745‑M2/6‑68 (MQ=255) gctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGa < 2:294303‑M2/63‑1 (MQ=255) gctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGa > 2:275794‑M2/6‑68 (MQ=255) aATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATg < 2:301072‑M2/67‑1 (MQ=255) aATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATg < 2:498222‑M2/67‑1 (MQ=255) aATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATg < 2:704586‑M2/67‑1 (MQ=255) aATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATg < 1:152545‑M2/67‑1 (MQ=255) ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATga > 2:932345/1‑67 (MQ=255) ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGc > 2:358224/1‑68 (MQ=255) ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGc > 1:496529/1‑68 (MQ=255) ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGc > 1:16434/1‑68 (MQ=255) | CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGC > NC_000913/1300633‑1300765 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |