Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,770,2320CG63.6% ‑5.0 / 11.3 12intergenic (+86/+11)yibU/yibHpseudogene, H repeat‑associated protein/putative membrane fusion protein (MFP) component of efflux pump
Reads supporting (aligned to +/- strand):  ref base C (0/4);  new base G (7/0);  total (8/4)
Fisher's exact test for biased strand distribution p-value = 3.03e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.15e-03
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

CATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTA  >  NC_000913/3770165‑3770286
                                                                   |                                                      
catcGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATctcc                                                        <  1:764707/68‑1 (MQ=255)
  tcGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATctcccc                                                      <  2:910511/68‑1 (MQ=255)
       tcTAATGATGTAATAAGCATAATTAATTAGTCCTTACAAGGAGCTTAGTTCCTTAATctcccccctcc                                                 <  2:211468/67‑1 (MQ=255)
       gCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATctcccccctcc                                                 <  1:386517/68‑1 (MQ=255)
              aaGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTGGGCCCACCCCCACaa                                          >  1:941559/1‑68 (MQ=255)
                  aaTATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATGATGTGGGCCCACCCCCACAAAGAt                                      >  1:30015/1‑68 (MQ=255)
                  aaTATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATGTGGAACCTCCCCCTCAATGAt                                      >  2:289444/1‑68 (MQ=255)
                   atatGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATc                                     <  1:141901/68‑1 (MQ=255)
                       gCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCGTAATGGGGGCCCACCCCCGCAAAGAACCaaa                                 >  1:921617/1‑68 (MQ=255)
                                atTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATaa                        <  1:80044/68‑1 (MQ=255)
                                   aGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGc                     <  1:529813/68‑1 (MQ=255)
                                     tCCTTACAAGGAGCAAAGTTCCATAATCAGAACCCTCCCCCACAAAGAACCAAATAAAGAAAATGCAt                   >  1:446625/1‑68 (MQ=255)
                                      ccTTACAAGGAGCAAAGTTCGATAATGTGGGCCCTCCCCCACAAAGGTCCAAATAAAGATAATGAAta                  >  2:513872/1‑67 (MQ=255)
                                              ggAGCAAAGTTCCATAATGTGGGCCCTCCCCCTCAATGGTCCAAATAAAGATAAAGCATCAAGCAGGt          >  2:540985/1‑68 (MQ=255)
                                                  cAAAGTTCAATAATCTCGCCCCACCCCCTCAAAGAACCAAATAAAGATAATGAATCCAGCTGGTCaat      >  1:610650/1‑66 (MQ=255)
                                                      gTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa  <  2:30015/68‑1 (MQ=255)
                                                                   |                                                      
CATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTA  >  NC_000913/3770165‑3770286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑