| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,197,502 | C→T | G11R (GGA→AGA) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,197,502 | 0 | C | T | 100.0% | 92.8 / NA | 30 | G11R (GGA→AGA) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (11/19); total (11/19) | |||||||||||
CTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTT > NC_000913/1197437‑1197566 | cTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGt < 1:524253/68‑1 (MQ=255) cGCAAAGATATCTTGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 2:41852/68‑1 (MQ=255) cGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 1:228251/68‑1 (MQ=255) gaaaGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGAGAATATTAACTCTGTGCat < 1:818137/67‑1 (MQ=255) cAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTTCat < 2:188058/68‑1 (MQ=255) aaaGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCata > 1:428469/1‑68 (MQ=255) aGATATCTAGAGGGCATCGTATGAGTTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCAtatt < 1:44218/68‑1 (MQ=255) aGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCAtatt < 1:199138/68‑1 (MQ=255) aGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCAtatt < 2:580006/68‑1 (MQ=255) aGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCAtatt < 1:460619/68‑1 (MQ=255) tCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGt < 2:562362/68‑1 (MQ=255) cTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGtt > 1:295679/1‑68 (MQ=255) agagGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCa > 1:415852/1‑68 (MQ=255) agGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 1:278391/53‑1 (MQ=255) agGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc > 2:278393/1‑53 (MQ=255) gggCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAg > 1:416281/1‑68 (MQ=255) gggCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTAAAGTTCAAAg < 1:868649/68‑1 (MQ=255) ggCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGc < 2:670308/68‑1 (MQ=255) gCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAg < 2:822469/66‑1 (MQ=255) gCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAg > 1:822465/1‑66 (MQ=255) cATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCaa < 2:958440/68‑1 (MQ=255) ggTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCa < 1:714788/68‑1 (MQ=255) gTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGt > 2:287257/1‑36 (MQ=255) gTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGt < 1:287255/36‑1 (MQ=255) gTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCaa > 2:444165/1‑68 (MQ=255) gTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCaa > 2:690464/1‑68 (MQ=255) ttttGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAAt > 1:233346/1‑68 (MQ=255) gAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGt < 2:233346/68‑1 (MQ=255) aCTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCa > 2:174694/1‑38 (MQ=255) aCTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCa < 1:174694/38‑1 (MQ=255) ctctGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCtttt > 1:332633/1‑68 (MQ=255) | CTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTT > NC_000913/1197437‑1197566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |