| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2467683 = | 27 (1.220) | 3 (0.160) | 3/114 | 1.8 | 12.2% | coding (1139/1158 nt) | intS | CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase |
| ? | NC_000913 | 2467783 = | 20 (1.050) | intergenic (+81/‑72) | intS/gtrA | CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase/CPS‑53 (KpLE1) prophage; bactoprenol‑linked glucose translocase/flippase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTTTGCACTGGATTGCAAGACTTTGTGCTATTCGATAGTTGTTAAGGTCGCTCACTCCACCTTCTCATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2467754‑2467683‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctcatcaaCCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGA > NC_000913/2467783‑2467846 GCTTTGCACTGGATTGCAAGACTTTGTGCTATTCGATAGTTGTTAAGGTCGCTCACTCCACCTTCTCA > 1:51591/1‑68GCTTTGCACTGGATTGCAAGACTTTGTGCTATTCGATAGTTGTTAAGGTCGCTCACTCAACCTTCTCA > 2:353056/1‑68 CTTTGCACTGGATTGCAAGACTTTGTGCTATTCGATAGTTGTTAAGGTCGCTCACTCCACCTTCTCAT > 1:18839/1‑68 CTTTGCACTGGATTGCAAGACTTTGTGCTATTCGATAGTTGTTAAGGTCGCTCACTCCACCTTCTCAT > 1:623703/1‑68 CTTTGCACTGGATTGCAAGACTTTGTGCTATTCGATAGTTGTTAAGGTCGCTCACTCCACCTTCTCAT > 2:198172/1‑68 TAAGGTCGCTCACTCCACCTTCTCATCAACCACAGCAAGTATCGATCGAT < 1:31184/50‑1 TAAGGTCGCTCACTCCACCTTCTCATCAACCACAGCAAGTATCGATCGAT > 2:31184/1‑50 ACTCCACCTTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTT < 1:344876/68‑1 ATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTG < 1:609798/68‑1 TCAACCACAGCAAGTTTCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGA < 1:400377/68‑1 GCTTTGCACTGGATTGCAAGACTTTGTGCTATTCGATAGTTGTTAAGGTCGCTCACTCCACCTTCTCATCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2467754‑2467683‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctcatcaaCCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGA > NC_000913/2467783‑2467846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |