| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1362001 = | 19 (0.860) | 3 (0.160) | 3/114 | 1.8 | 14.2% | coding (91/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible |
| ? | NC_000913 | 1362051 = | 20 (1.050) | coding (141/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTT > NC_000913/1361985‑1362110 | cagcgtactgctggcaGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTg < 1:363307‑M1/52‑1 (MQ=255) cgtactgatggcagtgctgactttatcttgttctatcgtactgatagcactgtgagtcagcccTGCCa < 2:645979‑M2/5‑1 (MQ=255) tggcaGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCACTGCCATCAGTACg < 2:645979‑M1/63‑1 (MQ=255) tcCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCt < 2:777370/68‑1 (MQ=255) cagggctgactttatcttgttctatcgtactgatagcactgtgagtcagcccTGCCAGCAGTACGCTg < 1:363307‑M2/16‑1 (MQ=255) cGGTCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGc < 1:644636/68‑1 (MQ=255) CTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGcaaag < 2:520147‑M1/68‑2 (MQ=255) ctttatcttgttctatcgtactgatagcactgtgagtcagcccTGCCATCAGTACGCTGCAAAAgctg < 1:770795‑M2/25‑1 (MQ=255) aGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGaa > 2:523430/1‑68 (MQ=255) aGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGaa > 2:483306/1‑68 (MQ=255) aGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGaa > 2:1813/1‑68 (MQ=255) aGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGaa > 2:785/1‑68 (MQ=255) aGTGCTATCAGAACCATAGAACAAGATAAAGTCAGCCCTGCCATCAGTCCGCTGCAAAAGCTGCTGaa > 1:39128/1‑68 (MQ=255) tGCTATCAGTACGATAGAACAAGTTAAAGTCAGCCCTGCCATCAGTACGCTGCTATCGCTGCTGAAgg < 1:576901/68‑1 (MQ=255) tGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAgg < 1:804599/68‑1 (MQ=255) tGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAgg < 1:576899/68‑1 (MQ=255) tGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAgg < 1:308574/68‑1 (MQ=255) aTCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTa > 2:214579/1‑68 (MQ=255) aTCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTa > 2:638245/1‑68 (MQ=255) aTCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTa > 2:387397/1‑68 (MQ=255) cAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATg > 1:690400/1‑68 (MQ=255) gTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGt < 2:96953/68‑1 (MQ=255) gTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGt < 2:367667/68‑1 (MQ=255) aGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCAc > 1:554980/1‑68 (MQ=255) aTAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGaa > 2:244763/1‑68 (MQ=255) aaGTCAGCCCGGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTc < 2:244875/68‑1 (MQ=255) gtcagcccTGCCATCAGTACGCTGCAAAAGCTGCTGATGGTGTATGGTCTGTCACTCTCGGAATTCtt > 2:526783‑M2/9‑68 (MQ=255) gtcagcccTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCtt > 2:264662‑M2/9‑68 (MQ=255) gtcagcccTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCtt > 1:476450‑M2/9‑68 (MQ=255) | TGCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTT > NC_000913/1361985‑1362110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |