| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,197,502 | C→T | G11R (GGA→AGA) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,197,502 | 0 | C | T | 100.0% | 113.2 / NA | 36 | G11R (GGA→AGA) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (12/24); total (12/24) | |||||||||||
CTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTT > NC_000913/1197437‑1197566 | cTCGCAAAGATATCTAGAGGGCATCGTATGAGGTGTTGCTGCATTCTCTGAGCGAATATTAACTCTGt < 1:654927/68‑1 (MQ=255)cTCGCAAAGATATCTAGAGGGCATCGTATGAGGGGTTGCTGCATTCTCTGAGCGAATATTAACTCTGt < 1:185252/68‑1 (MQ=255) cGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 1:171202/68‑1 (MQ=255) cGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 2:823030/68‑1 (MQ=255) cGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 2:758022/68‑1 (MQ=255) cGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 2:45844/68‑1 (MQ=255) cGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 1:506141/68‑1 (MQ=255) cAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCat < 1:456685/68‑1 (MQ=255) aaaGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCata < 2:174129/68‑1 (MQ=255) aGATATCTAGAGTGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCAtatt < 2:533699/68‑1 (MQ=255) aGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCAtatt < 1:649345/68‑1 (MQ=255) aGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCAtatt < 1:678702/68‑1 (MQ=255) tCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGt < 1:61608/68‑1 (MQ=255) agagGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCa > 2:745763/1‑68 (MQ=255) gggCATCGTATGAGGTTTTTCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAg < 2:462885/68‑1 (MQ=255) gggCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc > 1:571530/1‑52 (MQ=255) gggCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 2:571530/52‑1 (MQ=255) gggCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGt < 2:188181/62‑1 (MQ=255) gggCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGt > 1:773459/1‑62 (MQ=255) gggCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGt > 1:188181/1‑62 (MQ=255) gggCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGt < 2:773461/62‑1 (MQ=255) gggCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAg > 2:235248/1‑68 (MQ=255) gCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCa > 1:681977/1‑68 (MQ=255) ccGTATGAGGTTGTGCCGCATTCTCAGAGCGAATATTAACTCTGTGCATATTATAGCTCAAAGCAAGt < 1:362364/67‑1 (MQ=255) tATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTAcc < 1:638590/68‑1 (MQ=255) aGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTc > 2:450351/1‑68 (MQ=255) ggTTTTGCTGCATTCTCTGAGCGAACATTAACTCTGTGc > 1:140712/1‑39 (MQ=38) ggTTTTGCTGCATTCTCTGAGCGAACATTAACTCTGTGc < 2:140712/39‑1 (MQ=38) gTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 2:398463/38‑1 (MQ=255) gTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc > 2:248296/1‑38 (MQ=255) gTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc < 1:248297/38‑1 (MQ=255) gTTTTGCTGCATTCTCTGAGCGAATATTAACTCTGTGc > 1:398464/1‑38 (MQ=255) tatTAACTCTGTGCATATTATAGTTCAAAGCAAGt < 2:694936/35‑1 (MQ=255) tatTAACTCTGTGCATATTATAGTTCAAAGCAAGt > 1:694936/1‑35 (MQ=255) atTAACTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAAtt < 1:214449/68‑1 (MQ=255) aCTCTGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCttt > 1:207480/1‑68 (MQ=255) ctctGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCtttt > 2:165094/1‑68 (MQ=255) | CTCGCAAAGATATCTAGAGGGCATCGTATGAGGTTTTGCTGCATTCTCTGAGCGAATATTAACTCCGTGCATATTATAGTTCAAAGCAAGTACCATTCAATTAATGTTATTTTTAGTGAAAAATTCTTTT > NC_000913/1197437‑1197566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |