| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 28 (0.990) | 4 (0.190) | 4/100 | 1.6 | 14.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 26 (1.220) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCT > NC_000913/1207724‑1207857 | tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCtt > 2:756667/1‑68 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg < 1:677699‑M1/3‑1 (MQ=255) taaatccccctggaaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTgg < 2:1017479‑M1/4‑1 (MQ=255) gCCGCAACAAACCGATTGACGATAACAAATCGGATGGCGCTGAGCAAACGGCTCTCGAACACCTTGGt > 1:631130/1‑68 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 2:26939‑M1/5‑1 (MQ=255) cGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGttt > 1:434679/1‑68 (MQ=255) aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGgaga > 1:693980/1‑68 (MQ=255) cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa < 2:87349/68‑1 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc < 2:937010/68‑1 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGt > 1:882353‑M1/42‑46 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGt < 2:882359‑M1/5‑1 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg < 1:150108‑M1/10‑1 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg > 2:150109‑M1/42‑51 (MQ=255) aTCGAATGGCACTGTGCAAACGGATCTCGAAAACCTAGGTTTGGGAGAAGGAGCAAAACTCAATgaag > 2:959595/1‑68 (MQ=25) tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc < 2:382253/68‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg > 2:1015728‑M1/30‑68 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCt < 1:1013403/68‑1 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt > 1:269876/1‑68 (MQ=255) accgtgCAAACGGCTCTCGATAACCTTGGTTTGGGAGAAGGAGCAAATCTCCATGCAGCAACGGCTAc < 1:432624/65‑1 (MQ=25) aCTGTGCAAACGGCTCTCGAAATCCTTGTTTTGGGAGAAGGAGCATATCTCAATGCAGCAACGGCTAc < 1:48951/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGTGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 2:927696/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc < 1:524726/49‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc > 2:524731/1‑49 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 1:459978/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 1:639491/68‑1 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTCTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 1:681389/68‑1 (MQ=255) aCTGGGCAAACGGCTCTCGAAACCCCTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc < 1:369860/68‑1 (MQ=37) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 2:1039166‑M1/25‑68 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 2:517096/1‑68 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:292794/68‑1 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGCCGc > 1:157652/1‑68 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc < 2:850046/68‑1 (MQ=255) cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:332533/1‑68 (MQ=255) cGGCTCTCGAAAAACTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGCCGc > 1:235270/1‑68 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg < 1:1023253‑M1/58‑1 (MQ=255) cccTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:47555/67‑1 (MQ=255) acgTTGGTTTGTGAGATGGAGCAAAACTCAATGCAGCAACGGCGACATTAGGACGCACCGGTTTCATa > 1:580883‑M1/4‑68 (MQ=255) aCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:865804/68‑1 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc < 2:64495/68‑1 (MQ=255) TTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCt > 1:411218‑M1/1‑68 (MQ=255) | TAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCT > NC_000913/1207724‑1207857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |