Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,299,499 Δ1,199 bp intergenic (+254/‑485) ychE → / → oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1299499–1300696 1300697 2–1199 12 [0] [0] 12 ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12994980 (0.000)10 (0.380) 9/124 1.0 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGC  >  NC_000913/1300633‑1300765
                                                                 |                                                                   
gcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaata                                                                   >  2:802273‑M2/66‑68 (MQ=255)
                    aatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatt                                                 <  1:301618‑M2/21‑1 (MQ=255)
                    aatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAatt                                                 >  2:301621‑M2/46‑66 (MQ=255)
                       gatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATtgt                                            <  1:495284‑M2/26‑1 (MQ=255)
                              ttaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTc                                     >  2:856776‑M2/36‑68 (MQ=255)
                                  ttccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCacta                                 <  1:14766‑M2/37‑1 (MQ=255)
                                    ccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCactact                               >  2:1022780‑M2/30‑68 (MQ=255)
                                       ctgccttttgtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGa                            <  2:553491‑M2/42‑1 (MQ=255)
                                                gtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGAGCATTTCACTACTGGAACTgtaaac                   >  2:485835‑M2/18‑66 (MQ=255)
                                                       aaagagctaaATAATAATCAATTGATAAATTATTGTGCATTTCACTAATGGAACTGTAATCAGAAAAg            >  2:68816‑M2/11‑68 (MQ=255)
                                                            tctaaATAATAATAAATTGTTTAATTATTGAGAATTTCAATACTTGAACTGTAATCAGAAAAGATAGa       >  2:190439‑M2/6‑68 (MQ=255)
                                                                 ataataatCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGc  >  1:186380/1‑68 (MQ=255)
                                                                 |                                                                   
CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGC  >  NC_000913/1300633‑1300765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.