| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,984,188 | 0 | C | G | 33.3% | 37.9 / 13.0 | 24 | G294G (GGG→GGC) | araG | L‑arabinose ABC transporter ATPase |
| Reads supporting (aligned to +/- strand): ref base C (3/13); new base G (8/0); total (11/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.24e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTAC > NC_000913/1984126‑1984255 | atatAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTAcgccccgc < 1:416223/68‑1 (MQ=255)atatAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTAcgccccgc < 2:4479/68‑1 (MQ=255) ataAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTAcggcccgccc > 2:394907/1‑68 (MQ=255) aaCCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTa < 2:77223/68‑1 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTAcc > 2:981985/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTAcc > 2:727829/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTAcc > 1:700506/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGACCGCCCCTAcc > 2:45866/1‑68 (MQ=255) ccTGACCGGCGGTGATTTGCGTCCCGCAAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTAcc > 2:680335/1‑68 (MQ=255) tGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAg < 2:934102/68‑1 (MQ=255) aCCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTACCAggc > 2:428364/1‑66 (MQ=255) aCCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAgcc > 2:671082/1‑66 (MQ=255) tGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGc < 2:323808/68‑1 (MQ=255) cgATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGc < 1:684618/67‑1 (MQ=255) gCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCcaaca < 1:377979/68‑1 (MQ=255) gTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTa < 1:291153/46‑1 (MQ=255) gTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTa > 2:291156/1‑46 (MQ=255) tCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAAtt < 2:888799/68‑1 (MQ=255) cccGCCAAACATGCCTTTCATTAATTCGCTACGGCCCGCCCCTACCAGACCAAACAGCCCAACAAttt > 1:366262/1‑68 (MQ=255) aCATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCCCCACTg > 1:291483/1‑68 (MQ=255) cTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAAcc < 1:877088/68‑1 (MQ=255) tAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCTACATTTTCTCCACTGCGAACCGCGAGAc < 2:651539/68‑1 (MQ=255) tAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGAc < 1:26197/68‑1 (MQ=255) tAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGAc < 2:913386/68‑1 (MQ=255) aaTTCGCTACGCCCCGCCCCTACCAGACCTAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACt < 1:913266/68‑1 (MQ=255) tCGCTACGGCCCGCCCCTACCAGACCAAACAGCCCAACAATTTAACCACTGCGAACCGCCAGACTTAt > 2:714048/1‑68 (MQ=255) cTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTgg < 2:417106/68‑1 (MQ=255) ccccgccccTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTac < 2:603255/68‑1 (MQ=255) | ATATAAACCTGACCGGCGGTGATTTGCGTCCCGCCAAACATGCCTTTCATTAATTCGCTACGCCCCGCCCCTACCAGACCAAACAGCCCAACAATTTCACCACTGCGAACCGCCAGACTTATTGGCGTAC > NC_000913/1984126‑1984255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |