| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4054137 | 14 (0.390) | 4 (0.130) | 4/112 | 2.3 | 22.2% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | NC_000913 | = 4054157 | 16 (0.520) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
CCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGC > NC_000913/4054073‑4054202 | ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 2:127672/68‑1 (MQ=255) cAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATc < 1:1195824/68‑1 (MQ=255) ggTTTCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCaa < 2:415050/68‑1 (MQ=255) gAAGTACTCTCCGCAACCGTTGAATCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc < 2:145753‑M2/68‑6 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:614975/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:61561/68‑1 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgt > 1:30917‑M1/1‑33 (MQ=255) gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATcgc > 1:891159/1‑66 (MQ=255) cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:1166661/68‑1 (MQ=255) cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:719479/68‑1 (MQ=255) cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:624570/68‑1 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaa > 1:1135966‑M1/1‑28 (MQ=255) ccGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaat > 1:367354‑M2/1‑47 (MQ=255) cGTTGATTCAAACAGTTCGCCGGGCAggaagtgttggttcaggatttggccggcgaactgtttgaata > 2:256997‑M1/1‑26 (MQ=255) tatTCAAACAGTTCGCCGGCCAAATCCTGAACCAACACTTCCtgcccggcgaactgtttgaatcaacg > 2:256997‑M2/2‑42 (MQ=255) aTTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacgg > 1:367354‑M1/1‑21 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggt > 1:1135966‑M2/1‑40 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCACCACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 2:542128/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcgg > 1:30917‑M2/1‑35 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGAGGCAg > 2:45446/1‑68 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:1144877/1‑68 (MQ=255) cGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGttt < 2:927949/68‑1 (MQ=255) gggCAggaagtgttgattcaggatttgcccggcgaactgtttgattcaacggttgcggagagtacttc < 2:145753‑M1/68‑64 (MQ=255) gCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGc > 1:29096/1‑68 (MQ=255) | CCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGC > NC_000913/4054073‑4054202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |