| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 43 (1.210) | 12 (0.450) | 9/98 | 0.9 | 33.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 16 (0.600) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
ATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA > NC_000913/1209535‑1209669 | aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACTCCAACAGGTAATGCagag > 1:44644/1‑68 (MQ=255)aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag < 2:238890/68‑1 (MQ=255) tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc > 1:171310‑M2/1‑67 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGCGcct < 2:238663‑M2/68‑4 (MQ=255) tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct < 2:480730‑M2/68‑4 (MQ=255) ccagccTGTTGTCGGAGTTGCTGAATGCAACGGAACTGTGACATCAACAGGTATTGCATATCCTtctc < 2:1038042/68‑1 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc > 2:522621‑M2/1‑61 (MQ=255) ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaa < 1:1265571‑M2/68‑12 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt > 2:1008275/1‑68 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa < 1:330107‑M2/47‑13 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa > 2:330105‑M2/1‑35 (MQ=255) ggAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATa < 2:1231442/68‑1 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg < 1:658872‑M2/60‑32 (MQ=255) gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccg > 2:658870‑M2/1‑29 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgattgcacagt < 1:1101007‑M2/68‑42 (MQ=255) cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgc > 2:1044185‑M2/1‑25 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcc < 1:920947‑M2/68‑45 (MQ=255) acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa > 1:388773/1‑68 (MQ=255) aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga < 1:320945‑M2/68‑56 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgata < 1:1096757‑M2/68‑58 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccga > 2:93718‑M2/1‑11 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccga < 1:93718‑M2/61‑51 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACTTTTATGAAAATGAAGAAATAACAATCAAATGGCATCttt < 1:1299167/68‑1 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTAATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt > 2:1283414/1‑68 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg > 2:133665/1‑68 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg > 2:331083/1‑68 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAATATGATGAATTAACTAGCAAATGGCATCATTCCTGc < 2:771552/68‑1 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 2:853796/68‑1 (MQ=255) agcgCCTTCTCCCAAACCACCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAGCATTCCTGCtt > 2:77433/4‑68 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaa < 1:823559‑M2/68‑65 (MQ=255) agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaa < 2:63690‑M2/68‑65 (MQ=255) agagccttctcccaaaccaaggatttcgagagccgtttgcacagtgccaaccgatatgatatcgccaa < 1:827496‑M2/68‑65 (MQ=255) agCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAAAACAAGCAAATGGCATCATTCCTGCtttt < 2:177906/68‑1 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg < 1:1163347/44‑1 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg > 2:1163346/1‑44 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa < 2:200712/68‑1 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa > 1:1000909/1‑68 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTa > 2:525750/1‑68 (MQ=255) | ATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA > NC_000913/1209535‑1209669 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |