| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1964259 = | 34 (0.960) | 4 (0.130) | 3/114 | 2.7 | 11.3% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | NC_000913 | 1964341 = | 33 (1.060) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGTTAATGACCATG > NC_000913/1964276‑1964406 | ccAGCGCCTGAATTTGTTCCACCAGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCgtgt < 1:107330/68‑1 (MQ=255)ccAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCgtgt < 2:111120/68‑1 (MQ=255)ccAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCgtgt < 2:1096124/68‑1 (MQ=255)ccAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGAgtgt > 1:1247873/1‑68 (MQ=255) ctattgaccattggcgactgtcttgtggcacaaattccggcgctcggtatttctaccgcctcgTGTcc < 1:1097989‑M2/5‑1 (MQ=255) ccGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATg < 1:1011558/68‑1 (MQ=255) tttGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATg < 1:775298/68‑1 (MQ=255) ggcgacggtctggtggcacaaattccgtcgctgggtatttctaccgccgcgTGTCCCATGCTCATGcc < 1:907694‑M2/17‑1 (MQ=255) tgCCACCAGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCAt < 1:923041/68‑1 (MQ=255) cgacggtcttgtgtcacaaattccggcgctggtgatttctaccgcctcgTGTCCCATGCTCATGCCAt < 1:1309874‑M2/19‑1 (MQ=255) cgacggtctggcggcacaatttccggcgctggtgatttctaccgccgcgTGTCCCATGCTCATGCCAt < 2:779753‑M2/19‑1 (MQ=255) ccaccaGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGt < 1:398470/68‑1 (MQ=255) ccaccaGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGt < 1:980980/68‑1 (MQ=255) aCCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTgcagcc > 1:200019/1‑67 (MQ=255) aCCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTgcagca > 1:1317720/1‑68 (MQ=255) aCCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTgcagca > 1:897403/1‑68 (MQ=255) aCCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCACATGCTCAAGCAATATTgcagca > 2:1213333/1‑68 (MQ=255) cGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACg > 1:71750/1‑68 (MQ=255) tCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGcc < 2:707716/68‑1 (MQ=255) ggTCAATAGCGTATAACTTTCCGCAGCGTGTCCCATGATCATGCCAAGTTGCAGCACGACGACCAggg > 1:964351/1‑66 (MQ=255) cAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAAcc < 2:1059194/68‑1 (MQ=255) cAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAAcc < 1:1093134/68‑1 (MQ=255) aTAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGCCCAGCAACccg > 1:352388/1‑68 (MQ=255) aTAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACccg > 1:160888/1‑68 (MQ=255) aGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACccgcc > 2:259507/1‑68 (MQ=255) aGCGTATAACTTTCCGCCGCGTGACCCATGCTCATCCCATGTTGAAGCACGCCGACCAGCAACccgac > 2:641874/1‑66 (MQ=255) aGCGTATAACAATCCGCCGCGTGTCCCAAGCTCATGCCGTGTTGCAGCACGCCGACCAGCACCccgac > 2:392052/1‑66 (MQ=37) gCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACccgccg < 2:131248/68‑1 (MQ=255) taACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAAt < 1:98536/68‑1 (MQ=255) taACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAAt < 1:686748/68‑1 (MQ=255) aCTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGt < 2:159070/68‑1 (MQ=255) aCTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGt < 2:71750/68‑1 (MQ=255) aCTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGt > 2:228613/1‑68 (MQ=255) aCTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGt > 1:832801/1‑68 (MQ=255) aCTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGt < 2:26160/68‑1 (MQ=255) aCTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGt > 2:590577/1‑68 (MQ=255) aCTTTCCGCCGAGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGAACAGCACCCCGCCGCCAATGt > 2:531544/1‑68 (MQ=255) ccgccgcgTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGTTAATg > 2:949048‑M2/9‑68 (MQ=255) gccgcgTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGTTAATGAc < 2:1158686‑M2/62‑1 (MQ=255) gccgcgTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGTTAATGAc < 1:228614‑M2/62‑1 (MQ=255) ccgcgTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGTTAATGAcc < 1:903145‑M2/63‑1 (MQ=255) ccgcgTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGTTAATGAcc < 1:1068385‑M2/63‑1 (MQ=255) gcgTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGTTAATGACCAt < 2:160888‑M2/65‑1 (MQ=255) cgTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGTTAATGACCATg < 2:832799‑M2/66‑1 (MQ=255) | CCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTATAACTTTCCGCCGCGTGTCCCATGCTCATGCCATGTTGCAGCACGCCGACCAGCAACCCGCCGACAATGTTAATGACCATG > NC_000913/1964276‑1964406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |