New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	27 (0.940)	21/124	0.2	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

TGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT  >  NC_000913/1299431‑1299565                                                                    |                                                                    tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                                     <  2:262887‑M1/68‑1 (MQ=255)    gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAata                                                                  >  2:275944‑M1/1‑65 (MQ=255)         cTGAAGAATAATTGAAATGATATTTTTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataatatt                                                             >  1:736710‑M1/1‑60 (MQ=255)           gaagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatca                                                           <  2:468581‑M1/68‑11 (MQ=255)              gaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                                        <  2:808515‑M1/68‑14 (MQ=255)                ataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                                      >  2:586830‑M1/1‑53 (MQ=255)                 taatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtt                                                     <  1:479970‑M1/68‑17 (MQ=255)                     tGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaat                                                 >  2:974431‑M1/1‑48 (MQ=255)                      gAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatt                                                <  1:532292‑M1/68‑22 (MQ=255)                        aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattat                                              >  2:62292‑M1/1‑45 (MQ=255)                        aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattat                                              <  1:369127‑M1/68‑24 (MQ=255)                        aaTGATATAATTAAATCCACAGCCATTGGTAGAGGAAAGAGCTAAataataatcaattgttaaattat                                              <  1:370477‑M1/68‑24 (MQ=255)                             ttttattaatTCCTCTGCCTTTGTTAGAGGAAAGTGCTAAataatattcaattgttaaattattgtgc                                         <  2:336151‑M1/66‑29 (MQ=255)                             tattatTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgc                                         <  2:355060‑M1/68‑29 (MQ=255)                                 attaATTCCACTGACTTTGGTAGAGGAAAGTACTAAataataatcaattgttaaattattgtgcattt                                     >  2:698691‑M1/1‑36 (MQ=255)                                   taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcg                                   >  2:514854‑M1/1‑34 (MQ=255)                                   taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                                   >  1:660899‑M1/1‑34 (MQ=255)                                      ttCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacta                                <  2:171001‑M1/68‑38 (MQ=255)                                       tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactac                               >  1:599286‑M1/1‑30 (MQ=255)                                       tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactac                               >  1:249569‑M1/1‑30 (MQ=255)                                        ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactact                              <  2:8169‑M1/68‑40 (MQ=255)                                        ccACTGCCTTAGGTAGAGGATAGTGCTAAataataatcaattgttaaattattgtgcatttcactact                              >  1:1021174‑M1/1‑29 (MQ=255)                                            tGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                          >  1:111646‑M1/1‑25 (MQ=255)                                                      agagGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcag                >  2:117096‑M1/1‑15 (MQ=255)                                                        agGAAAGTACTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa              <  1:698693‑M1/68‑56 (MQ=255)                                                           aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag           >  1:382734‑M1/1‑10 (MQ=255)                                                           aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag           >  2:547994‑M1/1‑10 (MQ=255)                                                           aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag           <  2:804197‑M1/68‑59 (MQ=255)                                                                    aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg  <  2:326980‑M1/68‑68 (MQ=255)                                                                    aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg  <  1:547994‑M1/68‑68 (MQ=255)                                                                    |                                                                    TGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT  >  NC_000913/1299431‑1299565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.