Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908 258683 776 31 [1] [0] 30 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579071 (0.030)22 (0.820) 16/116 0.3 98.0% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG  >  NC_000913/257843‑257973
                                                                |                                                                  
tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                 <  1:270898‑M1/68‑4 (MQ=255)
tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGCGAAGGTAagt                                                                 <  2:1048776‑M1/68‑4 (MQ=255)
tGGACACACGTTGTGTAGATTGATAAAAAAATTTACCGCTCTAGTCCCGTATATTCTTGAatgtaagt                                                                 <  1:410258/68‑1 (MQ=255)
 ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg                                                                <  2:358948‑M1/68‑5 (MQ=255)
 ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg                                                                <  2:853142‑M1/68‑5 (MQ=255)
      cccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaag                                                           <  1:809121‑M1/68‑10 (MQ=255)
             agCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcg                                                    >  1:913676‑M1/1‑52 (MQ=255)
               cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                  <  2:694588‑M1/68‑19 (MQ=255)
                  aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagagcaaagataatcgattct                                               <  1:1087159‑M1/68‑22 (MQ=255)
                   ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGATGGTAagtgcaaagataatcgattctt                                              <  1:1068898‑M1/68‑23 (MQ=255)
                   ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctt                                              <  2:94427‑M1/68‑23 (MQ=255)
                   ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctg                                              >  1:261098‑M1/1‑46 (MQ=255)
                        cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                         >  2:650948‑M1/1‑41 (MQ=255)
                            aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattg                                     >  2:362720‑M1/1‑37 (MQ=255)
                             aaTCTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgcttctttttcgattgt                                    <  2:913673‑M1/68‑33 (MQ=255)
                               ttaaccgCACTAGTCCCGTATATTCGTGAAGGTAagtgcaaagattatcgattctttttcgtttgtct                                  <  1:243702‑M1/65‑35 (MQ=255)
                                   ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                              <  1:825158‑M1/68‑39 (MQ=255)
                                   ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                              <  1:257805‑M1/68‑39 (MQ=255)
                                       aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat                          >  1:203958‑M1/1‑26 (MQ=255)
                                             cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtca                    >  1:825400‑M1/1‑20 (MQ=255)
                                             cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtca                    >  2:78318‑M1/1‑20 (MQ=255)
                                                  atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtg               >  1:1045751‑M1/1‑15 (MQ=255)
                                                       cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc          >  2:1134559‑M1/1‑10 (MQ=255)
                                                          gAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                       >  2:33233‑M1/1‑7 (MQ=255)
                                                          gAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                       <  1:33233‑M1/52‑46 (MQ=255)
                                                           aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca      <  2:305389‑M1/68‑63 (MQ=255)
                                                           aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca      <  1:362720‑M1/68‑63 (MQ=255)
                                                           aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca      <  1:103299‑M1/68‑63 (MQ=255)
                                                            aGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac     >  2:770566‑M1/1‑5 (MQ=255)
                                                             ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc    >  2:866319‑M1/1‑4 (MQ=255)
                                                               tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgg  >  2:956734‑M1/1‑2 (MQ=255)
                                                                |                                                                  
TGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG  >  NC_000913/257843‑257973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: