| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,209,420 | 0 | C | G | 51.8% | 11.1 / 36.7 | 28 | pseudogene (200/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base C (5/8); new base G (14/0); total (20/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.80e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-03 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGC > NC_000913/1209357‑1209487 | caaTGGGCATGAACCTCCGTTGAATACCCCTGAATACTTAAAATAGAGCGACCTGTATCCATCCcccg > 2:353415/3‑68 (MQ=255) aTGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATcgcccgcc > 1:534089/1‑68 (MQ=255) gCATGATCCTCCGTTGCGTACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCGCCCGCCCGTc > 2:224776/1‑68 (MQ=255) aTCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATccc < 2:608009/68‑1 (MQ=255) cctccGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCGCCCGCCCGTCATCCCAg > 2:884299/1‑68 (MQ=255) cctccGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCGCCCGCCCGTCATCCCAg > 1:786780/1‑68 (MQ=255) cctccGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAg > 2:940108/1‑68 (MQ=255) gTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACg < 2:461478/68‑1 (MQ=255) gTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACg > 1:912970/1‑68 (MQ=255) ttGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCGCCCGCCCGTCATCCCAGCCACGa > 1:1059409/1‑68 (MQ=255) aTACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCGCCCGCCCGTCATCCCGGCCACGAATaa > 2:520474/1‑68 (MQ=255) ccTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTca < 1:41487/68‑1 (MQ=255) aaTACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTcaccac < 2:27921/68‑1 (MQ=255) cTTAAAATAGAGCGACCTGTATCAATCGCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTaa > 1:525621/1‑68 (MQ=255) cTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTaa < 2:291283/68‑1 (MQ=255) aTAGAGCGACCTGTATCGATCGCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAgg > 2:932134/1‑68 (MQ=255) aTAGAGCGACCTGTATCAATCGCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAgg > 2:448127/1‑68 (MQ=255) aTAGAGCGACCTGTATCAATCGCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAgg > 2:494597/1‑68 (MQ=255) aTAGAGCGACCTGTATCAATCGCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAgg > 2:750998/1‑68 (MQ=255) tAGAGCGACCTGTATCGATCCCCCGCCCGACATCCCAGCCACGAATAAACTCCCCACGTAAATCAGGc > 2:452881/1‑68 (MQ=255) tAGAGCGACCTGTATCAATCGCCCGCCCGTCATCCCAGCCGCGAATAAACTCACCGCGTGAATCAGGc > 2:397347/1‑68 (MQ=255) tAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTcaccac > 2:323360/1‑57 (MQ=255) tAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTcaccac < 1:323360/57‑1 (MQ=255) cGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAattt < 2:124648/68‑1 (MQ=255) gACCTGTATCAATCGCCCGCCCGTCATCCCAGCCACGAATAAACTCACCGCGTAAATCAGGCTattta > 1:777815/1‑68 (MQ=255) gACCTGTATCAATCGCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAattta > 1:163684/1‑68 (MQ=255) aTCAATCGCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCg > 1:274951/1‑68 (MQ=255) tCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCgg < 2:589194/68‑1 (MQ=255) acAATCACCCGCACGTCATCCCAGCCACGAAAAAACTCACCACGTAAATCAGGCAATTTATTTGACgg > 2:318787/2‑68 (MQ=255) ccccGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAACTTATTTGTCGGATAAGc < 2:131289/68‑1 (MQ=255) | CCATGAGCATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGC > NC_000913/1209357‑1209487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |