Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,770,2310CG44.4% 15.1 / 14.5 18intergenic (+85/+12)yibU/yibHpseudogene, H repeat‑associated protein/putative membrane fusion protein (MFP) component of efflux pump
Reads supporting (aligned to +/- strand):  ref base C (0/10);  new base G (8/0);  total (8/10)
Fisher's exact test for biased strand distribution p-value = 2.29e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT  >  NC_000913/3770172‑3770281
                                                            |                                                  
gCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCGATAATgtggcccctcc                                            >  2:437198/1‑68 (MQ=255)
 cTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATctcccccctccc                                           <  2:336785/68‑1 (MQ=255)
   aaTGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATctcccccctccccc                                         <  1:844326/68‑1 (MQ=255)
     tGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATctgagccctaccccgc                                       >  2:319497/1‑66 (MQ=255)
      gAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCa                                      <  2:514601/68‑1 (MQ=255)
              atGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAGTCTGAACCCTCCCCCTCAATGATCCa                              >  1:504431/1‑68 (MQ=255)
                tcAAAAATAATTAGTCCTTACAATGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCaaa                            <  2:808816/67‑1 (MQ=255)
                gCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCGATAGTGTGGGACCACACCCTCAATGATCaaaa                            >  2:582276/1‑68 (MQ=255)
                gCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATGTGGCCCCTCCCCCACAAAGATACaaa                            >  2:440907/1‑68 (MQ=255)
                gCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCaaa                            <  2:964512/68‑1 (MQ=255)
                gCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCaaa                            <  2:776581/68‑1 (MQ=255)
                 cAAAAATAATTAGTCCTTACAATGAGCAAAGTTCCATAATCTCCCCCCCTCCCCCTCAATGATCCaaa                            <  1:232074/68‑1 (MQ=255)
                       taatTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGAt                     <  1:170892/68‑1 (MQ=255)
                          ttAGTCCTTACAAGGAGCAAAGTTCCATAATCGGCGCCCGCCCCCACAATGATACAAAAAAAGATAAt                  >  1:617979/1‑68 (MQ=255)
                            aGTCCTTACAAGGAGCAAAGTTCCATAATGTGGACCCGCCCCCACAATGATCCAAATAAAGaaaaaga                >  2:1019657/1‑65 (MQ=255)
                            aGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGc                <  2:1107128/68‑1 (MQ=255)
                                     aaGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTg       <  1:709733/68‑1 (MQ=255)
                                       ggAGCAAAGTTGGATAATGTGGGCCCTCCCCCTCAATGATCCAAATAAAGATAATGAATCCAGCTGGt     >  1:962491/1‑68 (MQ=255)
                                       ggAGCAAAGTTCGATAATGTGAACCCACCCCCACAATGATCCAAAAAAAGAAAATGAAACCAGCTggg     >  2:137349/1‑67 (MQ=255)
                                       ggAGCAAAGTTCCATAATGTGGGCACGCCCCCACAAAGATACAAATAAAGATAATGAAAACAGCAGGt     >  1:63571/1‑68 (MQ=255)
                                          gCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt  <  1:437198/68‑1 (MQ=255)
                                          gCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt  <  1:173344/68‑1 (MQ=255)
                                                            |                                                  
GCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT  >  NC_000913/3770172‑3770281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: