| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 857644 | 20 (1.080) | 5 (0.300) | 3/118 | 1.6 | 21.9% | noncoding (29/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 857679 | NA (NA) | noncoding (64/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGA > NC_000913/857577‑857689 | aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 2:381462/68‑1 (MQ=255)aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:148585/68‑1 (MQ=255)aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 2:218414/68‑1 (MQ=255)aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 2:148723/68‑1 (MQ=255)aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc > 1:108527/1‑68 (MQ=255)aCTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:348818/68‑1 (MQ=255) cTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACg < 1:660651/68‑1 (MQ=255) tGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGc > 2:178091/1‑68 (MQ=255) cGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGt < 1:135082/68‑1 (MQ=255) ggggTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTa < 1:171230/68‑1 (MQ=255) ggggTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTa < 2:529845/68‑1 (MQ=255) ggttGACGGCGGCTGATGACAAATTCTAAATAGCCTGATGCGCTACGCTTACCAGGCCTACGCAGTAc < 2:445504/65‑1 (MQ=21) gACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGc < 1:178091/68‑1 (MQ=255) gACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGc < 2:302528/68‑1 (MQ=255) ggcggcTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAat < 1:528494/68‑1 (MQ=255) ctgcTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAatat < 2:669394/66‑1 (MQ=255) ggcTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAatata < 2:353883/68‑1 (MQ=255) aTGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAg < 1:554418/68‑1 (MQ=255) tGCAAAATAGCCTGATGCGCTACTCTTATCAGGCCTACGCAGTACCTGCAATATATCGAATCTGCAgg < 2:355117/68‑1 (MQ=255) agCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAgg < 1:317960/67‑1 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTTCAATATATTGAATCTGCAGGACTTTGTAg < 1:325827/68‑1 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCTGTATATTGAATCTGCAGGACTGTGTAg > 1:465798/1‑68 (MQ=18) aTGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCgg < 1:341800/68‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGa > 2:509959/1‑68 (MQ=255) ccTACGCAGTACCTGCAATATATTGAATCTGCAGGACtt < 2:95994/39‑1 (MQ=255) ccTACGCAGTACCTGCAATATATTGAATCTGCAGGACtt > 1:95994/1‑39 (MQ=255) | ACTGTCGGGGTGACGGCGGCTGATGACAAATGCAAAATAGCCTGATGCGCTACGCTTATCAGGCCTACGCAGTACCTGCAATATATTGAATCTGCAGGACTTTGTAGGCCGGA > NC_000913/857577‑857689 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |